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. 2020 Aug 22;85:153310. doi: 10.1016/j.phymed.2020.153310

Table 4.

Results of the docking of CAFDs on the crystal structure of SARS-CoV-2 spike ectodomain structure (open state) (6VYB).

Ligand Name MolDock Score Protein-Ligand Interactions Internal Ligand Interactions H-Bond
Nelfinavir -148.747 -176.89 28.1432 -2.49896
Khaınaosıde C -166.448 -161.803 -4.64496 -8.71808
Khaınaosıde B -165.435 -193.843 28.408 -9.1829
Calceolarioside B -153.135 -177.198 24.0631 -11.6422
Calceolarioside C -151.284 -203.133 51.8485 -15.5073
Calceolarioside D -149.841 -171.435 21.5938 -6.20592
Eutıgosıde A -144.298 -150.757 6.45875 -8.94751
Dodegranoside A -142.831 -161.943 19.1118 -6.51745
Vitexfolin A -142.604 -173.882 31.278 -12.4266
Chicoric acid -141.566 -164.796 23.2302 -6.62961
Propyl 3-(3,4-dihydroxyphenyl)-2-[(E)-3-(3,4-dihydroxyphenyl)prop-2- -139.154 -149.85 10.6965 -6.13396
6-O-Caffeoylarbutin -137.225 -160.96 23.7351 -9.99943
Cynarin -133.964 -180.052 46.0882 -3.61595
Robustaside D -133.688 -139.895 6.20761 -7.9848
Calceolarioside A -133.035 -170.659 37.6243 -13.4663
Robustaside E -132.278 -154.031 21.7532 -4.63369
Methyl (2R)-3-(3,4-dihydroxyphenyl)-2-[(E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxypropanoate -129.816 -140.552 10.7361 -3.44702
Scrophuloside B -129.274 -159.233 29.959 -5.75544
Neochlorogenic acid -116.183 -137.163 20.9802 -8.85752
Dactylifric acid -114.666 -128.192 13.5263 -5.90671
Fertaric acid -111.217 -123.587 12.3705 -2.53938
Caftaric acid -109.539 -124.99 15.4504 -9.02851
Prenyl caffeate acid -109.296 -118.722 9.42623 -3.47987
Chlorogenic acid -108.993 -132.887 23.8942 -8.6096
Coutaric acid -103.861 -113.724 9.86261 -2.97925
p-Coumaric acid -87.9961 -96.8163 8.82013 -4.60597
Caffeic acid -85.3883 -91.7692 6.38084 -7.06512
Ferulic -83.9251 -89.969 6.04391 -2.71179