Table 2.
Main findings for association with ACR at p<10−7 using TOPMed reference imputation in the HCHS/SOL (n=11,688)
Chr | Position (hg38) | SNPID | Coded allele |
Non-coded | AF coded | beta | P | Nearby Gene | Function | 1000 Genome Project allele frequencies | Replication UK Biobank P | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AFR | AMR | EUR | |||||||||||
2 | 27346004 | rs10205592 | C | T | 0.56 | −0.075 (0.014) | 1.1×10−7 | GTF3C2 | intronic | 0.87 | 0.51 | 0.41 | NA |
2 | 108390209 | rs13021399 | T | A | 0.56 | −0.081 (0.015) | 9.9×10−8 | SULT1C4 | intergenic | 0.02 | 0.53 | 0.26 | 0.36 |
2 | 108897145 | rs3827760 | G | A | 0.29 | 0.097 (0.019) | 1.6×10−7 | EDAR | missense | 0.003 | 0.39 | 0.01 | 0.10 |
2 | 109624640 | rs919942 | A | C | 0.63 | 0.071 (0.014) | 8.2×10−7 | SOWAHC | intergenic | 0.33 | 0.69 | 0.54 | 0.52 |
2 | 111121122 | rs116907128 | A | C | 0.14 | 0.120 (0.022) | 3.5×10−8 | BCL2L11 | UTR5 | 0.002 | 0.17 | 0.001 | NA |
3 | 196146539 | rs540878340 | A | G | 0.002 | 0.914 (0.176) | 2.0 × 10−7 | LINC00885 | ncRNA_intronic | 0.02 | 0.001 | NA | NA |
11 | 5227002 | rs334 | A | T | 0.01 | 0.530 (0.082) | 8.4 ×10−11 | HBB | missense | NA | NA | ||
11 | 103974051 | rs7103465 | A | G | 0.03 | 0.248 (0.049) | 3.7 × 10−7 | PDGFD | intronic | 0.11 | 0.02 | 0.02 | 0.41 |
11 | 114155245 | rs527493184 | A | G | 0.002 | 1.029 (0.180) | 1.1 × 10−8 | ZBTB16 | intronic | 0.01 | 0.003 | NA | NA |
16 | 86734887 | rs11117207 | C | T | 0.08 | −0.128 (0.025) | 3.6 × 10−7 | FOXL1 | intergenic | 0.27 | 0.08 | 0.04 | 0.62 |
17 | 54416610 | rs115573116 | T | C | 0.002 | 0.756 (0.145) | 1.7 × 10−7 | TOM1L1 | intergenic | 0.03 | 0.001 | NA | NA |
22 | 16823805 | rs1032642268 | A | G | 0.002 | 0.873 (0.176) | 7.1 × 10−7 | XKR3 | intergenic | NA | NA | NA | NA |
Abbreviations: AF, allele frequency; Chr, chromosome; P, p-value; 1kg, 1000 Genome Project; AA, African American; HA, Hispanics; SE, standard deviation; UKB, UK Biobank; AFR, African; AMR, Admixed Americans; EUR, European