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. Author manuscript; available in PMC: 2021 Aug 1.
Published in final edited form as: Circ Genom Precis Med. 2020 Jun 29;13(4):e002891. doi: 10.1161/CIRCGEN.119.002891

Table 2.

Main findings for association with ACR at p<10−7 using TOPMed reference imputation in the HCHS/SOL (n=11,688)

Chr Position (hg38) SNPID Coded
allele
Non-coded AF coded beta P Nearby Gene Function 1000 Genome Project allele frequencies Replication UK Biobank P
AFR AMR EUR
2 27346004 rs10205592 C T 0.56 −0.075 (0.014) 1.1×10−7 GTF3C2 intronic 0.87 0.51 0.41 NA
2 108390209 rs13021399 T A 0.56 −0.081 (0.015) 9.9×10−8 SULT1C4 intergenic 0.02 0.53 0.26 0.36
2 108897145 rs3827760 G A 0.29 0.097 (0.019) 1.6×10−7 EDAR missense 0.003 0.39 0.01 0.10
2 109624640 rs919942 A C 0.63 0.071 (0.014) 8.2×10−7 SOWAHC intergenic 0.33 0.69 0.54 0.52
2 111121122 rs116907128 A C 0.14 0.120 (0.022) 3.5×10−8 BCL2L11 UTR5 0.002 0.17 0.001 NA
3 196146539 rs540878340 A G 0.002 0.914 (0.176) 2.0 × 10−7 LINC00885 ncRNA_intronic 0.02 0.001 NA NA
11 5227002 rs334 A T 0.01 0.530 (0.082) 8.4 ×10−11 HBB missense NA NA
11 103974051 rs7103465 A G 0.03 0.248 (0.049) 3.7 × 10−7 PDGFD intronic 0.11 0.02 0.02 0.41
11 114155245 rs527493184 A G 0.002 1.029 (0.180) 1.1 × 10−8 ZBTB16 intronic 0.01 0.003 NA NA
16 86734887 rs11117207 C T 0.08 −0.128 (0.025) 3.6 × 10−7 FOXL1 intergenic 0.27 0.08 0.04 0.62
17 54416610 rs115573116 T C 0.002 0.756 (0.145) 1.7 × 10−7 TOM1L1 intergenic 0.03 0.001 NA NA
22 16823805 rs1032642268 A G 0.002 0.873 (0.176) 7.1 × 10−7 XKR3 intergenic NA NA NA NA

Abbreviations: AF, allele frequency; Chr, chromosome; P, p-value; 1kg, 1000 Genome Project; AA, African American; HA, Hispanics; SE, standard deviation; UKB, UK Biobank; AFR, African; AMR, Admixed Americans; EUR, European