Table 3.
SNV | CHR | POS (hg38) | Coded allele | Other allele | Coded allele frequency | Coded Allele count |
N | BETA | SE | P | Gene |
---|---|---|---|---|---|---|---|---|---|---|---|
rs12032996 | 1 | 33454985 | A | G | 0.19 | 4380 | 11688 | −0.001 | 0.018 | 0.97 | ZSCAN20 |
rs10157710 | 1 | 47496019 | T | C | 0.70 | 16357 | 11688 | 0.017 | 0.015 | 0.27 | FOXD2 |
rs11162351 | 1 | 77479047 | G | C | 0.32 | 7576 | 11688 | −0.001 | 0.015 | 0.95 | AK5 |
rs11264327 | 1 | 155122631 | A | G | 0.51 | 12027 | 11688 | −0.011 | 0.014 | 0.44 | EFNA1 |
rs12727104 | 1 | 171454028 | A | G | 0.17 | 3973 | 11688 | −0.005 | 0.019 | 0.78 | PRRC2C |
rs12727980 | 1 | 200289967 | T | C | 0.58 | 13624 | 11688 | 0.018 | 0.014 | 0.21 | LINC00862 |
rs4665972 | 2 | 27375230 | C | T | 0.67 | 15758 | 11688 | −0.078 | 0.015 | 1.7 × 10−7 | SNX17 |
rs6750228 | 2 | 51084986 | A | T | 0.06 | 1462 | 11688 | 0.040 | 0.030 | 0.18 | NRXN1 |
rs13394343 | 2 | 85527219 | A | C | 0.40 | 9464 | 11688 | 0.004 | 0.014 | 0.78 | LOC100630918 |
rs10207567 | 2 | 202850250 | C | G | 0.77 | 18089 | 11688 | 0.025 | 0.016 | 0.13 | ICA1L |
rs1047891 | 2 | 210675783 | A | C | 0.31 | 7307 | 11688 | −0.024 | 0.015 | 0.11 | CPS1 |
rs35483183 | 2 | 227011971 | A | G | 0.07 | 1698 | 11688 | 0.037 | 0.027 | 0.17 | COL4A4 |
rs6768627 | 3 | 46853886 | T | C | 0.10 | 2388 | 11688 | 0.014 | 0.023 | 0.55 | MYL3 |
rs112607182 | 3 | 170309619 | T | C | 0.03 | 654 | 11688 | 0.046 | 0.046 | 0.32 | PRKCI |
rs3805382 | 4 | 55605384 | G | A | 0.40 | 9288 | 11688 | 0.014 | 0.015 | 0.34 | NMU |
rs7654754 | 4 | 76488642 | A | G | 0.48 | 11204 | 11688 | −0.003 | 0.014 | 0.84 | SHROOM3 |
rs6535594 | 4 | 148211605 | A | G | 0.57 | 13421 | 11688 | 0.024 | 0.014 | 0.08 | NR3C2 |
rs702634 | 5 | 53975590 | A | G | 0.79 | 18513 | 11688 | 0.022 | 0.017 | 0.21 | ARL15 |
rs7731168 | 5 | 65000644 | C | G | 0.20 | 4761 | 11688 | 0.019 | 0.017 | 0.27 | CWC27 |
rs4410790 | 7 | 17244953 | C | T | 0.38 | 8913 | 11688 | −0.006 | 0.015 | 0.66 | AHR |
rs2023844 | 7 | 27203619 | A | G | 0.88 | 20613 | 11688 | 0.072 | 0.022 | 0.00095 | HOTTIP |
rs17158386 | 7 | 29765745 | A | G | 0.15 | 3583 | 11688 | 0.057 | 0.020 | 0.003 | WIPF3 |
rs55798132 | 8 | 2808621 | A | G | 0.008 | 193 | 11687 | −0.076 | 0.078 | 0.33 | LOC101927815 |
rs28601761 | 8 | 125487789 | G | C | 0.32 | 7553 | 11687 | −0.012 | 0.015 | 0.40 | TRIB1 |
rs45551835 | 10 | 16890385 | A | G | 0.017 | 405 | 11688 | 0.149 | 0.054 | 0.005 | CUBN |
rs144360241 | 10 | 16925418 | C | T | 0.005 | 122 | 11688 | 0.087 | 0.109 | 0.43 | CUBN |
rs1276720 | 10 | 16929427 | T | C | 0.57 | 13251 | 11688 | 0.014 | 0.014 | 0.33 | CUBN |
rs10995311 | 10 | 62805174 | G | C | 0.27 | 6208 | 11688 | 0.001 | 0.016 | 0.94 | ADO |
rs67339103 | 10 | 76133928 | A | G | 0.30 | 7106 | 11688 | 0.047 | 0.015 | 0.002 | C10orf11 |
rs17368443 | 11 | 10275289 | C | G | 0.04 | 1027 | 11688 | 0.043 | 0.035 | 0.22 | SBF2 |
rs1124694 | 11 | 11077129 | G | A | 0.30 | 6916 | 11688 | 0.001 | 0.015 | 0.96 | GALNT18 |
rs2601006 | 12 | 69585737 | T | C | 0.44 | 10299 | 11688 | 0.011 | 0.014 | 0.42 | CCT2 |
rs4288924 | 14 | 68835682 | A | G | 0.56 | 12993 | 11688 | −0.044 | 0.014 | 0.002 | ACTN1 |
rs8035855 | 15 | 41785763 | A | G | 0.60 | 14121 | 11688 | 0.004 | 0.014 | 0.80 | MAPKBP1 |
rs1145074 | 15 | 45411626 | A | T | 0.55 | 12930 | 11688 | −0.011 | 0.015 | 0.47 | SPATA5L1 |
rs146311723 | 15 | 63512308 | C | T | 0.096 | 2261 | 11688 | −0.014 | 0.023 | 0.55 | USP3 |
rs2472297 | 15 | 74735539 | T | C | 0.095 | 2232 | 11688 | 0.003 | 0.024 | 0.89 | CYP1A1 |
rs2338796 | 17 | 39399374 | G | A | 0.28 | 6471 | 11688 | −0.027 | 0.015 | 0.08 | FBXL20 |
rs35572189 | 17 | 81451999 | A | G | 0.35 | 8126 | 11688 | −0.004 | 0.014 | 0.78 | BAHCC1 |
rs784257 | 18 | 55729968 | C | T | 0.90 | 20951 | 11688 | −0.025 | 0.024 | 0.29 | TCF4 |
rs838142 | 19 | 48748894 | G | A | 0.40 | 9448 | 11688 | −0.003 | 0.014 | 0.84 | FUT1 |
SNVs rs183131780 (MIR548AR), rs35924503 (SPHKAP), rs189107782 (FRG1), rs144994089 (AQP7) and rs141640975 (CUBN) were not available.