Supplemental Data Table S1.
Primer for PCR identification of resistance determinants.
Gene | Primer | Sequence | PCR size (bp) |
---|---|---|---|
β-lactamase | VIM_F | ATTGGTCTATTTGACCGCGTC | 780 |
VIM_R | TGCTACTCAACGACTGAGCG | ||
IMP_F | CATGGTTTGGTGGTTCTTGT | 488 | |
IMP_R | ATAATTTGGCGGACTTTGGC | ||
NDM_F | TGGAATTGCCCAATATTATGC | 813 | |
NDM_R | TCAGCGCAGCTTGTCGGCCATGC | ||
OXA-48_F | TTGGTGGCATCGATTATCGG | 743 | |
OXA-48_R | GAGCACTTCTTTTGTGATGGC | ||
GES_F | ATGCGCTTCATTCACGCAC | 863 | |
GES_R | CTATTTGTCCGTGCTCAGGA | ||
KPC-2_F | ATGTCACTGTATCGCCGTCT | 893 | |
KPC-2_R | TTTTCAGAGCCTTACTGCCC | ||
Kpc-_F | CTGTCTTGTCTCTCATGGCC | 795 | |
Kpc_R | CCTCGCTGTGCTTGTCATC | ||
| |||
ESBLs | TEM_F | ATGAGTATTCAACATTTCCGT | 861 |
TEM_R | TTACCAATGCTTAATCAGTGA | ||
SHV_F | CCGGGTTATTCTTATTTGTCGCT | 831 | |
SHV_R | TAGCGTTGCCAGTGCTCG | ||
CTX-M-1_F | ACCGTCACGCTGTTGTTAGG | 819 | |
CTX-M-1_R | CAAGGTGACGATTTTAGCCG | ||
CTX-M-9_F | GTGCAACGGATGATGTTCG | 844 | |
CTX-M-9_R | ATGATTCTCGCCGCTGAAG | ||
| |||
AmpC | ACT_F | TCGGTAAAGCCGATGTTGCGG | 302 |
ACT_R | CTTCCACTGCGGCTGCCAGTT | ||
ACC_F | AACAGCCTCAGCAGCCGGTTA | 346 | |
ACC_R | TTCGCCGCAATCATCCCTAGC | ||
CMY_F | TGGCCAGAACTGACAGGCAAA | 462 | |
CMY_R | TTTCTCCTGAACGTGGCTGGC | ||
DHA_F | AACTTTCACAGGTGTGCTGGGT | 405 | |
DHA_R | CCGTACGCATACTGGCTTTGC | ||
| |||
Aminoglycoside | rmtA_F | CCCCATCGTGTGTTGGATAT | 635 |
rmtA_R | GCACGCCCATACAGATGTTA | ||
rmtB_F | CGCATCCTGACTGAGG | 584 | |
rmtB_R | GGTGCGTGCAGCCTCT | ||
rmtD_F | CACAGCAAATCGCCCA | 532 | |
rmtD_R | CGGTCAGTGCGTAAAC | ||
armA_F | TGAAAGAGTCGCAACATTAAATGA | 590 | |
armA_R | CCATTGGTATAAAGCTAATGGATTG | ||
| |||
Fluoroquinolone | qnrA_F | AGAGGATTTCTCACGCCAGG | 580 |
qnrA_R | TGCCAGGCACAGATCTTGAC | ||
qnrB_F | GGAATTGAAATTCGCCACTG | 264 | |
qnrB_R | TTTGCCGCCCGCCAGTCGAA | ||
qnrS_F | GCAAGTTCATTGAACAGGGT | 428 | |
qnrS_R | TCTAAACCGTCGAGTTCGGCG | ||
qepA_F | CCGACAGGCCCACGACGAGGATGC | 549 | |
qepA_F | TCGGCGGCGTGTTGCTGGAGTTCT | ||
| |||
Outer membrane protein | ompK35_F | AACTTATTGACGGCAGTGGC | 1,054 |
ompK35_R | TTGGTAAACGATACCCACGG | ||
ompK36_F | GCAGTGGCATAATAAAAGGCA | 1,080 | |
ompK36_R | ACTGGTAAACCAGGCCCAG |