Supplemental Data Table S1.
Primer for PCR identification of resistance determinants.
| Gene | Primer | Sequence | PCR size (bp) |
|---|---|---|---|
| β-lactamase | VIM_F | ATTGGTCTATTTGACCGCGTC | 780 |
| VIM_R | TGCTACTCAACGACTGAGCG | ||
| IMP_F | CATGGTTTGGTGGTTCTTGT | 488 | |
| IMP_R | ATAATTTGGCGGACTTTGGC | ||
| NDM_F | TGGAATTGCCCAATATTATGC | 813 | |
| NDM_R | TCAGCGCAGCTTGTCGGCCATGC | ||
| OXA-48_F | TTGGTGGCATCGATTATCGG | 743 | |
| OXA-48_R | GAGCACTTCTTTTGTGATGGC | ||
| GES_F | ATGCGCTTCATTCACGCAC | 863 | |
| GES_R | CTATTTGTCCGTGCTCAGGA | ||
| KPC-2_F | ATGTCACTGTATCGCCGTCT | 893 | |
| KPC-2_R | TTTTCAGAGCCTTACTGCCC | ||
| Kpc-_F | CTGTCTTGTCTCTCATGGCC | 795 | |
| Kpc_R | CCTCGCTGTGCTTGTCATC | ||
|
| |||
| ESBLs | TEM_F | ATGAGTATTCAACATTTCCGT | 861 |
| TEM_R | TTACCAATGCTTAATCAGTGA | ||
| SHV_F | CCGGGTTATTCTTATTTGTCGCT | 831 | |
| SHV_R | TAGCGTTGCCAGTGCTCG | ||
| CTX-M-1_F | ACCGTCACGCTGTTGTTAGG | 819 | |
| CTX-M-1_R | CAAGGTGACGATTTTAGCCG | ||
| CTX-M-9_F | GTGCAACGGATGATGTTCG | 844 | |
| CTX-M-9_R | ATGATTCTCGCCGCTGAAG | ||
|
| |||
| AmpC | ACT_F | TCGGTAAAGCCGATGTTGCGG | 302 |
| ACT_R | CTTCCACTGCGGCTGCCAGTT | ||
| ACC_F | AACAGCCTCAGCAGCCGGTTA | 346 | |
| ACC_R | TTCGCCGCAATCATCCCTAGC | ||
| CMY_F | TGGCCAGAACTGACAGGCAAA | 462 | |
| CMY_R | TTTCTCCTGAACGTGGCTGGC | ||
| DHA_F | AACTTTCACAGGTGTGCTGGGT | 405 | |
| DHA_R | CCGTACGCATACTGGCTTTGC | ||
|
| |||
| Aminoglycoside | rmtA_F | CCCCATCGTGTGTTGGATAT | 635 |
| rmtA_R | GCACGCCCATACAGATGTTA | ||
| rmtB_F | CGCATCCTGACTGAGG | 584 | |
| rmtB_R | GGTGCGTGCAGCCTCT | ||
| rmtD_F | CACAGCAAATCGCCCA | 532 | |
| rmtD_R | CGGTCAGTGCGTAAAC | ||
| armA_F | TGAAAGAGTCGCAACATTAAATGA | 590 | |
| armA_R | CCATTGGTATAAAGCTAATGGATTG | ||
|
| |||
| Fluoroquinolone | qnrA_F | AGAGGATTTCTCACGCCAGG | 580 |
| qnrA_R | TGCCAGGCACAGATCTTGAC | ||
| qnrB_F | GGAATTGAAATTCGCCACTG | 264 | |
| qnrB_R | TTTGCCGCCCGCCAGTCGAA | ||
| qnrS_F | GCAAGTTCATTGAACAGGGT | 428 | |
| qnrS_R | TCTAAACCGTCGAGTTCGGCG | ||
| qepA_F | CCGACAGGCCCACGACGAGGATGC | 549 | |
| qepA_F | TCGGCGGCGTGTTGCTGGAGTTCT | ||
|
| |||
| Outer membrane protein | ompK35_F | AACTTATTGACGGCAGTGGC | 1,054 |
| ompK35_R | TTGGTAAACGATACCCACGG | ||
| ompK36_F | GCAGTGGCATAATAAAAGGCA | 1,080 | |
| ompK36_R | ACTGGTAAACCAGGCCCAG | ||