Table 3.
Summary of other popular analytical tools
| Tools | Download | Tools | Download |
|---|---|---|---|
| SAMtools | https://github.com/samtools/samtools | SCDE | https://github.com/hms-dbmi/scde |
| SART | https://github.com/alexdobin/STAR | GeneQC | http://bmbl.sdstate.edu/GeneQC/home.html |
| MAST | https://github.com/RGLab/MAST | IRIS-EDA | http://bmbl.sdstate.edu/IRIS/ |
| Kallisto | https://github.com/pachterlab/kallisto | QUBIC2 | https://github.com/maqin2001/qubic2 |
| BPSC | https://github.com/nghiavtr/BPSC | CellRanger | https://github.com/10XGenomics/cellranger |
| salmon | https://github.com/COMBINE-lab/salmon | Scater | https://github.com/davismcc/scater |
| UML-tools | https://github.com/CGATOxford/UMI-tools | SAVER | https://github.com/mohuangx/SAVER |