Table 2. T cells epitopes prediction result.
No. | Start | Stop | Peptide | Methods | MHC class | Prediction based on | Tool | |||
---|---|---|---|---|---|---|---|---|---|---|
A | S | T | P | |||||||
1 | 1038 | 1046 | RVDFCGKGY | ANN | I | √ | √ | √ | √ | NetCTL |
2 | 1016 | 1024 | AEIRASANL | ANN | I | √ | IEDB-MHC I | |||
3 | 1015 | 1029 | AAEIRASANLAATKM | ANN | II | √ | IEDB-MHC II | |||
4 | 1038 | 1046 | RVDFCGKGY | SM | I and II | √ | MotifScan | |||
5 | 1041 | 1050 | FCGKGYHLM | QSAR | I and II | √ | MHCPred |
MHC, major histocompatibility complex; A, quantitative binding affinity; S, supertypes; T, TAP binding; P, proteasomal cleavage; ANN, artificial neural network; IEDB, Immune Epitope Database; SM, sequence motif; QSAR, quantitative structure-activity relationship model.