Table 5. Quantification of interfaces within the γ-carbonic-anhydrase (γCA) domain and between γCA and the proximal pumping domain (PP) of CI*.
Interface residues, surface areas, solvation free energies and P-values were determined by uploading the molecular model of CI* into the the PDBePISA tool for the exploration of macromolecular interfaces (Krissinel and Henrick, 2007). The table with the full list of interaction surfaces for CI* was filtered for the interfaces involving CA1, CA2 or CAL2. Total values were obtained by adding the relevant two-way interactions, as per PDBePISA guidelines.
| Subunit 1 | Subunit 2 | Inter-subunit interface | ||||||
|---|---|---|---|---|---|---|---|---|
| Subunit | # Interfacing residues | Interfacing surface area (Å2) | Subunit | # Interfacing residues | Interfacing surface area (Å2) | Interface surface area (Å2) | Interface solvation free energy (kcal/mol) | Solvation free energy gain P-value |
| Within γCA domain | ||||||||
| CA1 | 88 | 20,989 | CA2 | 80 | 22,088 | 2581.4 | −45.6 | 0.000 |
| CA1 | 79 | 20,989 | CAL2 | 72 | 20,073 | 2637.8 | −38.2 | 0.001 |
| CA2 | 73 | 22,088 | CAL2 | 66 | 20,073 | 2148.1 | −33.2 | 0.000 |
| Total | 7367.3 | −117 | ||||||
| Between γCA domain and membrane arm (PP) | ||||||||
| NU2M | 16 | 7610 | CA1 | 16 | 20,989 | 259.2 | −17.1 | 0.001 |
| NU2M | 16 | 7610 | CA2 | 16 | 22,088 | 261.1 | −17.1 | 0.001 |
| NU2M | 16 | 7610 | CAL2 | 16 | 20,073 | 263.6 | −18.0 | 0.003 |
| NDUC2 | 21 | 13,708 | CA1 | 21 | 20,989 | 427.8 | −20.2 | 0.000 |
| NDUC2 | 16 | 13,708 | CA2 | 16 | 22,088 | 242.3 | −15.8 | 0.000 |
| NDUC2 | 21 | 13,708 | CAL2 | 22 | 20,073 | 416.2 | −18.7 | 0.000 |
| P2 | 21 | 10,433 | CA1 | 21 | 20,989 | 362.6 | −16.5 | 0.000 |
| P2 | 26 | 10,433 | CA2 | 22 | 22,088 | 512.7 | −21.5 | 0.001 |
| P2 | 17 | 10,433 | CAL2 | 17 | 20,073 | 244.6 | −16.8 | 0.001 |
| NDUX1 | 16 | 13,955 | CA1 | 16 | 20,989 | 236.5 | −15.9 | 0.000 |
| NDUX1 | 17 | 13,955 | CA2 | 17 | 22,088 | 268.1 | −15.0 | 0.000 |
| NDUX1 | 16 | 13,955 | CAL2 | 16 | 20,073 | 240.9 | −16.7 | 0.000 |
| Total | 3735.6 | −209.3 | ||||||