Key resources table.

Reagent type (species) or resource	Designation	Source or reference	Identifiers	Additional information
Cell line (Homo-sapiens)	iPSC	www.hipsci.org	RRID:SCR_003909
Software, algorithm	MaxQuant	https://www.maxquant.org/	RRID:SCR_014485
Software, algorithm	Trim Galore	https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/	RRID:SCR_011847
Software, algorithm	STAR	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530905/	RRID:SCR_015899
Software, algorithm	Salmon	https://combine-lab.github.io/salmon/	NA
Software, algorithm	g:Profiler	http://biit.cs.ut.ee/gprofiler/	RRID:SCR_006809
Software, algorithm	eCAVIAR	http://zarlab.cs.ucla.edu/tag/ecaviar/	NA
Software, algorithm	VEP	https://www.ensembl.org/info/docs/tools/vep/index.html	RRID:SCR_007931
Software, algorithm	MutFunc	http://www.mutfunc.com/	NA
Software, algorithm	Limix	https://github.com/limix/limix	NA
Software, algorithm	Peer	http://www.sanger.ac.uk/resources/software/peer/	RRID:SCR_009326
Software, algorithm	Scikit-learn	http://scikit-learn.org/	RRID:SCR_002577