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. 2020 Aug 25;8:47. doi: 10.1186/s40635-020-00336-w

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — Alpha diversity and composition of gut microbiota. Fecal pellets were collected from mice from 3 different vendors (Janvier, Envigo, and Charles River) before intranasal inoculation with LPS or K. pneumoniae. a The presence of each phyla per vendor expressed in percentages. NA denotes non annotatable reads with unknown phylum classification. b The presence of the top 15 genera per vendor expressed in percentage, top 15 is based on abundance and makes 100%. c Alpha diversity, Inverse Simpson, Gini-Simpson, Shannon, Fisher, and Coverage. The abbreviations used to indicate vendors are as follows: Janvier (Jan), Envigo (Env), and Charles River (CR), n = 8