Table 1.
Differentially expressed genes (DEGs) encoding biosynthetic enzymes potentially involved in the flavonoid and anthocyanin pathway obtained from the comparison between MaMe Red and MaMe Yellow skin and flesh between mature green (MG), colour change (CC), and ripe (RP) stage.
| MG | CC | RP | Base mean | ||
|---|---|---|---|---|---|
| Skin comparison | |||||
| Acc00260.1 | Chalcone synthase 1 | 2.7 | 5.3 | 5.1 | 3,372 |
| Acc02004.1 | Chalcone synthase 1 | 2.4 | 5.6 | 6.1 | 4,397 |
| Acc08970.1 | Chalcone synthase 1 | 2.9 | 3.6 | 3.1 | 1,990 |
| Acc13879.1 | Anthocyanidin 3-O-glucoside 2″-O-glucosyltransferase | 2.9 | 2.6 | 3.9 | 260 |
| Acc16762.1 | Leucoanthocyanidin dioxygenase (LDOX) | 3 | 7.4 | 9.7 | 2,947 |
| Acc28876.1 | Leucoanthocyanidin dioxygenase (LDOX) | 3.2 | 8.2 | 11.3 | 11,830 |
| Acc03638.1 | Chalcone–flavonone isomerase 3 | 0 | 3.2 | 3.8 | 4,242 |
| Acc03848.1 | Chalcone–flavonone isomerase | 0.2 | 3 | 3.3 | 1,578 |
| Acc11493.1 | Flavonol synthase/flavanone 3-hydroxylase (FLS) | 1.1 | 5.6 | 4.6 | 36 |
| Acc20131.1 | Kaempferol 3-O-beta-d-galactosyltransferase | 1.8 | 8.4 | 9.8 | 4,692 |
| Acc20132.1 | Anthocyanidin 3-O-glucosyltransferase 2 | 0.7 | 8.5 | 11.2 | 77 |
| Acc24966.1 | Chalcone synthase 2 | 1.9 | 6.4 | 5.9 | 3,651 |
| Acc27670.1 | Chalcone–flavonone isomerase | 0 | 2.6 | 2.5 | 214 |
| Acc28896.1 | Flavonoid 3′,5′-hydroxylase 1 (F3′5′H) | − 1 | 2.3 | 3.5 | 65 |
| Acc32899.1 | Leucoanthocyanidin reductase | 0.5 | 3 | 3.3 | 189 |
| Acc20257.1 | Anthocyanidin 5,3-O-glucosyltransferase | 8.9 | 3.2 | 5.2 | 31 |
| Acc19353.1 | Dihydroflavonol 4-reductase (DFR) | 0.6 | 3.6 | 3.2 | 121 |
| Acc26615.1 | Leucoanthocyanidin reductase | − 0.4 | − 2.2 | − 5.6 | 23 |
| Acc26709.1 | Flavonol synthase/flavanone 3-hydroxylase | − 1.9 | − 2.5 | − 3.1 | 416 |
| Acc29470.1 | Isoflavone reductase homolog | 3.7 | 10.7 | 12.4 | 117 |
| Acc32390.1 | Flavonoid 3′,5′-hydroxylase 2 (F3′5′H) | 0.7 | 3.1 | 2.8 | 418 |
| Flesh comparison | |||||
| Acc00260.1 | Chalcone synthase 1 | 4 | 6.3 | 4.1 | 3,372 |
| Acc02004.1 | Chalcone synthase 1 | 3.7 | 5.1 | 5.2 | 4,397 |
| Acc08970.1 | Chalcone synthase 1 | 3.4 | 4.7 | 2.2 | 1,990 |
| Acc16762.1 | Leucoanthocyanidin dioxygenase (LDOX) | 3.8 | 7.7 | 8.9 | 2,947 |
| Acc20131.1 | Kaempferol 3-O-beta-d-galactosyltransferase | 5 | 7.1 | 5.9 | 4,692 |
| Acc20132.1 | Anthocyanidin 3-O-glucosyltransferase 2 | 6.5 | 8.1 | 7.2 | 77 |
| Acc24966.1 | Chalcone synthase 2 | 4.3 | 7.6 | 7.8 | 3,651 |
| Acc28876.1 | Leucoanthocyanidin dioxygenase (LDOX) | 3 | 6.2 | 7.5 | 11,830 |
| Acc29052.1 | Isoflavone reductase homolog | 5.2 | 8.7 | 12 | 1,645 |
| Acc32390.1 | Flavonoid 3′,5′-hydroxylase 2 (F3′5′H) | 4.1 | 6.3 | 2.3 | 417 |
| Acc01005.1 | Dihydroflavonol 4-reductase (DFR) | 0.2 | 4 | 2.5 | 545 |
| Acc03638.1 | Chalcone–flavonone isomerase 3 | 1 | 2.1 | 2.8 | 4,242 |
| Acc03848.1 | Chalcone–flavonone isomerase | 1.7 | 4 | 3.2 | 1,578 |
| Acc14022.1 | Leucoanthocyanidin reductase | 0.4 | 3.7 | 2.9 | 595 |
| Acc18331.1 | Flavonoid 3′-monooxygenase | 1.4 | 4.1 | 5.1 | 408 |
| Acc19353.1 | Dihydroflavonol 4-reductase (DFR) | 0.8 | 5.5 | 2.6 | 121 |
| Acc26709.1 | Flavonol synthase/flavanone 3-hydroxylase | − 1.8 | − 2.4 | − 2.5 | 416 |
| Acc29470.1 | Isoflavone reductase homolog | 2.5 | 7.9 | 10.6 | 117 |
| Acc32899.1 | Leucoanthocyanidin reductase | 0.6 | 4 | 3.9 | 188 |
| Acc28896.1 | Flavonoid 3′,5′-hydroxylase 1 (F3′5′H) | 2.7 | 2.9 | 1.6 | 64 |
Base means are shown as an indication of expression.