Table 2.
Differentially expressed genes (DEGs) encoding transcription factors in the MYB, bHLH, homeobox and NAC families that are possibly involved in the flavonoid and anthocyanin pathway obtained from the comparison between MaMe Red and MaMe Yellow skin and flesh between mature green (MG), colour change (CC), and ripe (RP) stage.
| MG | CC | RP | Base mean | ||
|---|---|---|---|---|---|
| Skin comparison | |||||
| Acc06303.1 | Homeobox-leucine zipper protein HOX16 | − 2 | − 3.7 | − 3.6 | 335 |
| Acc10232.1 | Transcription factor AtMYB114, AcMYB110 | 3 | 9.1 | 10.3 | 1,222 |
| Acc21917.1 | Transcription factor UNE10 (AtbHLH16) | 5.5 | 5.6 | 4.4 | 10 |
| Acc07314.1 | bZIP transcription factor 44 | − 0.3 | 2.3 | 2.1 | 226 |
| Acc11572.1 | Dof zinc finger protein DOF1.2 | 1.4 | 3.2 | 3.3 | 323 |
| Acc22908.1 | Transcription factor MYB108 | 1 | − 2.8 | − 4.4 | 267 |
| Acc12965.1 | Anthocyanin regulatory C1 protein, AcMYBC1 | 2.8 | 6.9 | 6.2 | 63 |
| Acc06281.1 | Transcription factor MYB1R1 | − 0.2 | − 2.7 | − 3.1 | 139 |
| Acc10227.1 | Transcription factor AtMYB75, AcMYB210 | − 0.2 | 5.4 | 4.6 | 5 |
| Acc16887.1 | WRKY transcription factor 44 | − 0.1 | 3.4 | 4.2 | 237 |
| Flesh comparison | |||||
| Acc00493.1 | Transcription factor AtMYB114, AcMYB10 | − 0.2 | 2 | 3.9 | 284 |
| Acc10232.1 | Transcription factor AtMYB114 , AcMYB110 | 4 | 9.3 | 11 | 1,222 |
| Acc12264.1 | Dof zinc finger protein DOF1.2 | 2 | 4.5 | 4.2 | 407 |
| Acc12965.1 | Anthocyanin regulatory C1 protein, AcMYBC1 | 7.2 | 8.3 | 8.4 | 63 |
| Acc21466.1 | Transcription factor bHLH149 | 2 | 3.5 | 2.2 | 41 |
| Acc24307.1 | Transcription factor MYB86 (AtMyb4) | − 5.2 | − 3 | − 2.1 | 19 |
| Acc31401.1 | Myb-related protein B (B-Myb) | − 2.7 | − 2.4 | − 3.2 | 40 |
| Acc02780.1 | WRKY transcription factor 70 | − 0.2 | 2.7 | 4.1 | 101 |
| Acc06319.1 | Myb-related protein B (B-Myb) | − 0.1 | − 2.8 | − 3.3 | 55 |
| Acc06321.1 | Homeobox-leucine zipper protein ATHB-13 | 0.5 | − 3.3 | − 2.8 | 83 |
| Acc07314.1 | bZIP transcription factor 44 | 0.1 | 2 | 2.1 | 226 |
| Acc08333.1 | Transcription factor bHLH14 | − 1.9 | − 2.8 | − 2.1 | 12 |
| Acc10227.1 | Transcription factor AtMYB75, MYB210 | 0.1 | 5.3 | 4.3 | 5 |
| Acc10925.1 | Transcription factor MYB86 (AtMyb4) | 0.5 | − 2.9 | − 3.6 | 14 |
| Acc11572.1 | Dof zinc finger protein DOF1.2 | 0 | 2.1 | 2.6 | 323 |
| Acc13277.1 | Myb-related protein 306 | 0 | − 2.9 | − 4.9 | 10 |
| Acc13287.1 | Cyclic dof factor 3 (AtDOF3.3) | 1.2 | − 2.5 | − 2 | 8 |
| Acc14650.1 | NAC domain-containing protein 21/22 | − 0.1 | − 4.6 | − 3.7 | 11 |
| Acc15830.1 | Transcription factor MYB1R1 | 0.4 | − 2.2 | − 2.6 | 1,320 |
| Acc16026.1 | Anthocyanin regulatory C1 protein, MYB12-like | 1.5 | 4 | 4.1 | 7 |
| Acc16887.1 | WRKY transcription factor 44 | 1.8 | 4.8 | 5.2 | 237 |
| Acc19793.1 | WRKY transcription factor 53 | − 0.4 | − 3.2 | − 2.2 | 330 |
| Acc20254.1 | WRKY transcription factor 27 | 1 | − 3.4 | − 2.3 | 24 |
| Acc23052.1 | Myb-related protein 306 | 0 | − 3.7 | − 3.3 | 115 |
| Acc23779.1 | Transcription factor MYB44 | − 1 | − 2.4 | − 2.9 | 143 |
| Acc28877.1 | Transcription factor bHLH120 | − 0.9 | − 4.4 | − 8.8 | 15 |
| Acc30637.1 | Homeobox-leucine zipper protein HAT5 | − 0.3 | − 2.3 | − 2.6 | 266 |
| Acc06303.1 | Homeobox-leucine zipper protein HOX16 | − 3.4 | − 2.6 | − 0.3 | 335 |
| Acc29560.1 | WRKY transcription factor 40 | 2 | 3.1 | 1.2 | 307 |
| Acc24555.1 | bZIP transcription factor 53 | 2.3 | − 0.6 | − 2.6 | 29 |
Base means are shown as an indication of expression.