Table 4.
Gene sets enriched in phenotype high
| Gene set name | Size | NES | NOM P-val | FDR q-val |
|---|---|---|---|---|
| KEGG_CELL_CYCLE | 124 | 2.13 | 0.000 | 0.002 |
| KEGG_DNA_REPLICATION | 36 | 2.08 | 0.000 | 0.002 |
| KEGG_RNA_DEGRADATION | 56 | 2.06 | 0.000 | 0.002 |
| KEGG_BLADDER_CANCER | 40 | 1.94 | 0.000 | 0.010 |
| KEGG_NON_SMALL_CELL_LUNG_CANCER | 54 | 1.78 | 0.008 | 0.029 |
| KEGG_THYROID_CANCER | 29 | 1.78 | 0.030 | 0.030 |
| KEGG_FC_GAMMA_R_MEDIATED_PHAGOCYTOSIS | 93 | 1.80 | 0.006 | 0.028 |
| KEGG_P53_SIGNALING_PATHWAY | 65 | 1.86 | 0.000 | 0.018 |
| KEGG_PURINE_METABOLISM | 152 | 2.10 | 0.000 | 0.002 |
NES: normalized enrichment score; NOM: nominal; FDR: false discovery rate. Gene sets with NOM P-val < 0.05 and FDR q-val < 0.25 are considered as significant