. 2020 Aug 24;58(9):e00284-20. doi: 10.1128/JCM.00284-20

TABLE 3.

Identity of whole-genome nucleotides among representative EV-D68 strains from the Lower Hudson Valley, NY, 2014 to 2018^a

EV-D68 strain^b	Yr	Clade	% identity
			B3-2016			B3-2018			B1-2014			B2-2014		Clade C			Clade D-2017/2018				Clade A			Prototype fermon
			NY212_16	NY230_16	NY234_16	NY606_18	NY543_18	NY639_18	NY120	NY130	NY329	NY73	NY74	USA/U807	USA/MO66	USA/C3578	NY736_18	NY747_18	NY586_17	NY652_18	USA/N0051U5	USA/O1312a	USA/U2752	Prototype fermon
NY212_16	2016	Subclade B3	100	99.4	99.2	98.7	98.6	98.6	95.7	95.8	95.8	94.0	94.2	93.1	92.4	94.7	89.4	89.1	89.1	89.7	90.1	90.2	90.7	88.0
NY230_16	2016	Subclade B3		100	99.2	98.7	98.6	98.5	95.7	95.8	95.7	93.9	94.2	93.0	92.4	94.5	89.4	89.1	89.1	89.7	90.0	90.1	90.7	87.9
NY234_16	2016	Subclade B3			100	98.5	98.4	98.3	95.7	95.8	95.7	94.0	94.2	93.1	92.4	94.7	89.5	89.2	89.2	89.8	90.0	90.1	90.6	87.9
NY606_18	2018	Subclade B3				100	99.6	99.6	95.3	95.4	95.4	93.1	93.3	92.7	92.1	94.3	89.0	88.7	88.7	89.4	89.7	89.7	90.3	87.7
NY543_18	2018	Subclade B3					100	99.6	95.3	95.4	95.4	93.0	93.3	92.7	92.1	94.3	89.1	88.9	88.8	89.4	89.7	89.8	90.3	87.8
NY639_18	2018	Subclade B3						100	95.3	95.3	95.3	93.1	93.3	92.7	92.1	94.2	89.1	88.8	88.7	89.4	89.6	89.8	90.3	87.7
NY120	2014	Subclade B1							100	100	97.9	94.3	94.6	93.2	92.8	94.9	89.6	89.3	89.2	89.6	90.2	90.2	90.7	87.7
NY130	2014	Subclade B1								100	98.0	94.4	94.6	93.2	92.9	95.0	89.6	89.4	89.3	89.7	90.2	90.2	90.8	87.8
NY329	2014	Subclade B1									100	94.2	94.5	93.3	93.1	95.0	90.0	89.8	89.6	90.0	90.6	90.5	91.1	88.0
NY73	2014	Subclade B2										100	100	93.1	92.2	94.5	88.9	88.9	88.8	89.3	90.0	90.2	90.6	87.6
NY74	2014	Subclade B2											100	93.3	92.4	94.7	89.1	89.1	89.0	89.3	90.1	90.3	90.7	87.8
USA/U807	2007	Clade C												100	97.5	97.5	90.4	90.4	90.5	90.6	91.6	91.5	92.3	88.5
USA/MO66	2009	Clade C													100	96.7	89.9	89.9	90.1	90.1	91.2	91.1	91.7	88.4
USA/C3578	2000	Clade C														100	91.6	91.6	91.6	91.8	92.7	92.6	93.4	89.4
NY736_18	2018	Clade D															100	99.5	97.6	97.4	90.8	91.0	91.4	87.2
NY747_18	2018	Clade D																100	98.0	97.2	91.0	91.2	91.6	87.4
NY586_17	2017	Clade D																	100	97.4	91.2	91.3	91.6	87.5
NY652_18	2018	Clade D																		100	91.2	91.3	91.8	87.8
USA/N0051U5	2012	Clade A																			100	98.9	98.1	88.1
USA/O1312a	2012	Clade A																				100	98.1	88.2
USA/U2752	2009	Clade A																					100	88.5
Fermon	1962	Prototype																						100

Data in gray boxes are the nucleotide identities of representative EV-D68 strains from the specific year and viral clade/subclade.

Accession numbers are as follows: for the clade C strains, KX255397, KX261826, and KX255357; for the clade A strains, KT347280, KX255358, and KX255409; and for prototype fermon, AY426531.