TABLE 3.
mprF SNP frequencies in strains J03 and D712 at days 7, 14, 21, and 28 of LOX passagea
Isolate | Passage | Replicate | Additional mprF SNP frequency at day: |
|||
---|---|---|---|---|---|---|
7 | 14 | 21 | 28 | |||
J03b | LOX | i | 0.58 | 0.74 | 0.11 | 0.00c |
J03b | LOX | ii | 0.11 | 0.08 | 0.78 | 0.98 |
J03b | LOX | iii | 0.51 | 0.61 | 0.79 | 0.99 |
D712d | LOX | i | 0.91 | 0.67 | 0.86 | 1.00 |
D712d | LOX | ii | 1.00 | 1.00 | 1.00 | 0.99 |
D712d | LOX | iii | 0.00 | 0.00 | 0.00 | 0.00 |
Frequency of mapped reads containing the alternative allele is represented.
Passage isolates maintained MprF T345I.
Value of 0.00 indicates that all mapped reads contained the reference allele.
Passage isolates maintained MprF L341S.