Table 2.
List of MSP primers used in this study
MSP | Primer | Sequence (5'-3') | Product size (bp) | PCR Cycles | Annealing temperature (°C) |
---|---|---|---|---|---|
MSP | ZDHHC1m1 | ATTTATCGGTTTAGTTTTCGTTC | 112bp | 40 | 60 |
ZDHHC1m2 | CTCCCCGAAACAACCGCG | ||||
ZDHHC1u1 | GATTTATTGGTTTAGTTTTTGTTT | 114bp | 40 | 58 | |
ZDHHC1u2 | CCTCCCCAAAACAACCACA | ||||
BGS | ZDHHC1BGSF | TTAAGAGGGTTTTTGGTAAGTT | 396bp | 40 | 60 |
ZDHHC1BGSR | TAAACCCTACCAAAATCAACC |
Note. MSP: methylation-specific PCR, BGS: Bisulfite genomic sequencing.