Table 3.
Summary of selected datasets that contain sequences of fungi in Herpotrichiellaceae.
| Accession large datasets | Accession samples | Dataset description |
|---|---|---|
| PRJNA379918 | SRR5399784, SRR5399785, SRR5399787, SRR5399789 | Rhizosphere: maize rhizosphere community under different phosphate sources45a |
| PRJNA362455 | SRR5195137, SRR5195141, SRR8056346, SRR8056347, SRR8056355 to SRR8056358 | Rhizosphere: citrus rhizosphere microbiome46 |
| PRJEB24131 | ERR2233399 to ERR2233446 | Rhizosphere: root-associated microbiome of maize genotypes with contrasting phosphorus use efficiency47a |
| PRJNA321130 | SRR3493327 | Ant: the fungal diversity found on the integument of Atta capiguara and A. laevigata alate ants48 |
| PRJNA237344 | SRR1786616, SRR1790680, SRR4833059 | Aquatic: evaluation of the waters of the Amazon River to the Atlantic Ocean, with sensitivity to climate variability and anthropogenic forces due to their immense scale: the Amazon River-Ocean Continuum (https://amazoncontinuum.org/) |
| PRJNA285006 | SRR2086459, SRR2086461, SRR2086464, SRR2086481 | Biotechnological: microbiome sugarcane filter cake compost piles to analyse the dynamics of fungal and bacterial communities along the process and biomass degrading profile for second generation bioethanol: CNPEM (https://cnpem.br/) |
| PRJEB5245 | ERR957350, ERR957352 to ERR957355 | Biotechnological: development of a microbial enrichment for sugarcane bagasse breakdown: CNPEM (https://cnpem.br/) |
| PRJNA339563 | SRR4065317, SRR4065319, SRR4065500 | Mycorrhizal: interactions of tropical mycoheterotrophic plants and their arbuscular mycorrhizal fungal hosts49 |
| PRJNA522264 | SRR8585376, SRR8585377, SRR8585380, SRR8585381, SRR8585384 to SRR8585386, SRR8585391, SRR8585392, SRR8585395 to SRR8585398, SRR8585411, SRR8585412, SRR8585414, SRR8585416, SRR8585417, SRR8585420, SRR8585425, SRR8585428, SRR8585430, SRR8585434 to SRR8585437, SRR8585453 to SRR8585457, SRR8585459, SRR8585461 to SRR8585465, SRR8585467, SRR8585468, SRR8585471, SRR8585474, SRR8585475, SRR8585489, SRR8585492, SRR8585494 to SRR8585497, SRR8585501 to SRR8585503, SRR8585506, SRR8585507, SRR8585509, SRR8585510, SRR8585513 to SRR8585518, SRR8585520, SRR8585530 to SRR8585533, SRR8585536, SRR8585538 | Plant: characterization of the microbiomes associated with two plant species (Vellozia epidendroides and Barbacenia macrantha) that thrive in the extremely P-impoverished soils of the Brazilian campos rupestres: the Genomics for Climate Change Research Center (https://www.genclima.cnptia.embrapa.br/) |
| PRJNA478407 | SRR7450155 to SRR7450157, SRR7450161 to SRR7450169, SRR7450174, SRR7450176, SRR7450177, SRR7450179, SRR7450181, SRR7450186 | Mangrove: metagenomics and metatranscriptomics of the microbial community involved in the transformation of organic carbon in mangrove sediments at São Paulo state: Embrapa Environment (https://www.embrapa.br/meio-ambiente) |
| PRJNA421085 | SRR6354886 | Soil: soils contaminated with crude oil50 |
aDifferent projects with related aims.