Table 2. Structural requirements of the binding pocket can guide scaffold-hopping. Pennington et al.47 showed that binding to a hydrophobic pocket called for the incorporation of a fluoropyridine rather than a similarly stable pyrimidine. RLM: rat liver microsomes.
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Entry | Compound | X | Y | RLM Clint (μL min–1 mg–1) | clog P |
1 | 6a | N | CH | 130 | 3.1 |
2 | 6b | CH | N | 67 | 3.1 |
3 | 6c | N | N | 28 | 2.3 |
4 | 6d | CF | N | 26 | 3.2 |