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. 2020 Aug 27;15(8):e0237834. doi: 10.1371/journal.pone.0237834

Table 3. Significant marker-trait associations detected under well-watered and drought stress conditions in the vegetative stage experiments for barley genotypes.

Trait Marker Chr Pos LOD FDR Expl. Gen. Variance Allele 1 Allele 2 WW Allele 1 WW Allele 2 DS Allele 1 DS Allele 2 h2 h2se
DM BOPA1_3689–1101 1H 48.94 7.73 2.72E-05 54.03 0.51 0.87 0.67 0.96 0.34 0.77 0.00 0.00
Sum 54.03
DMLt SCRI_RS_198546 1H 50.57 13.01 3.41E-10 72.37 0.18 0.28 0.22 0.41 0.14 0.14 0.00 0.00
Sum 72.37
DMSt BOPA1_7803–483 3H 142.63 7.19 6.55E-05 45.46 0.73 1.03 0.98 1.45 0.48 0.61 0.00 0.00
Sum 45.46
DME BOPA1_3689–1101 1H 48.94 7.73 2.72E-05 54.03 0.51 0.87 0.67 0.96 0.34 0.77 0.00 0.00
Sum 54.03
DMLGt SCRI_RS_198546 1H 50.57 13.01 3.41E-10 72.37 0.18 0.28 0.22 0.41 0.14 0.14 0.00 0.00
Sum 72.37
DMEms SCRI_RS_17898 2H 73.73 50.43 2.98E-48 73.81 0.07 0.41 0.12 0.46 0.02 0.37 0.53 0.04
SCRI_RS_15537 2H 108.00 48.50 1.29E-46 68.84 0.05 0.39 0.10 0.43 0.00 0.34
BOPA1_7803–483 3H 142.63 51.97 3.07E-49 77.24 0.43 0.09 0.48 0.14 0.39 0.04
BOPA2_12_20274 4H 3.47 9.10 3.32E-09 24.59 0.52 0.21 0.62 0.26 0.42 0.17
SCRI_RS_106799 4H 67.71 25.51 8.96E-25 44.80 0.39 0.12 0.44 0.16 0.33 0.08
SCRI_RS_120501 5H 168.54 24.75 4.72E-24 44.49 0.43 0.15 0.48 0.20 0.38 0.10
SCRI_RS_131341 6H 52.69 36.38 4.67E-35 59.12 0.05 0.36 0.10 0.41 0.00 0.32
SCRI_RS_208770 7H 44.41 33.00 7.44E-32 57.06 0.42 0.12 0.47 0.17 0.37 0.08
SCRI_RS_158234 7H 68.06 52.32 2.71E-49 77.92 0.06 0.41 0.11 0.45 0.01 0.36
GBS5464 7H 103.05 17.24 6.44E-17 38.34 0.40 0.15 0.44 0.20 0.35 0.10
GBS5208 7H 128.68 19.63 3.49E-19 41.98 0.42 0.15 0.47 0.20 0.36 0.11
Sum 96.78
DMLSms GBS6809 2H 67.49 25.5 8.6E-24 72.20 0.12 0.19 0.09 0.16 0.14 0.22 0.60 0.05
BOPA1_7803–483 3H 142.63 34.2 3.6E-31 78.92 0.21 0.12 0.18 0.10 0.24 0.15
SCRI_RS_158126 7H 67.78 33.5 8.4E-31 80.11 0.21 0.12 0.17 0.10 0.24 0.15
Sum 91.79
LF2ms SCRI_RS_175839 6H 88.74 3.22 3.55E-01 36.77 39.44 31.92 39.78 30.00 39.11 33.84 0.29 0.17
SCRI_RS_6430 7H 132.22 3.41 3.55E-01 42.76 38.10 30.99 37.27 29.35 38.92 32.63
Sum 48.90
Lms SCRI_RS_138463 2H 82.51 5.59 3.01E-03 11.49 58.01 51.99 66.17 58.43 49.84 45.55 0.19 0.06
SCRI_RS_119513 2H 114.38 4.38 6.96E-03 9.60 49.94 56.18 56.00 63.76 43.88 48.61
BOPA2_12_30609 3H 46.18 5.49 3.01E-03 12.33 50.71 56.92 57.97 64.16 43.46 49.69
BOPA2_12_30055 3H 155.03 3.83 8.61E-03 7.95 63.10 54.03 72.23 61.10 53.96 46.97
GBS4691 4H 81.57 3.29 1.68E-02 5.76 59.26 53.80 66.94 60.96 51.57 46.65
SCRI_RS_137053 5H 0.00 3.78 9.06E-03 7.26 58.90 53.34 66.49 60.41 51.30 46.27
GBS4257 5H 109.65 4.27 6.96E-03 9.85 51.71 57.17 58.05 65.14 45.37 49.21
GBS5879 7H 23.30 5.22 4.24E-03 14.69 46.65 56.12 53.35 63.47 39.95 48.77
BOPA2_12_30181 7H 53.19 3.92 8.48E-03 9.32 62.12 53.92 71.42 60.92 52.81 46.92
GBS2260 7H 91.78 3.40 1.44E-02 7.13 51.18 56.42 57.02 64.17 45.34 48.68
GBS2891 7H 118.48 3.81 8.61E-03 11.56 57.88 52.81 66.26 59.36 49.51 46.27
BOPA1_ABC11252-1-2-254 7H 132.22 6.51 1.74E-03 14.34 49.28 56.70 55.21 64.37 43.36 49.03
Sum 47.69
NLG BOPA2_12_30588 1H 15.08 5.84 6.29E-05 12.50 3.75 7.24 4.82 10.27 2.68 4.22 0.25 0.05
SCRI_RS_181239 1H 71.18 4.37 6.68E-04 9.50 8.58 6.45 12.02 9.11 5.13 3.78
SCRI_RS_162694 2H 7.79 4.00 1.24E-03 9.75 8.02 6.28 11.35 8.83 4.69 3.72
BOPA2_12_30259 2H 53.19 5.26 1.61E-04 13.16 8.15 6.14 11.20 8.87 5.10 3.41
SCRI_RS_9469 2H 67.92 8.21 3.51E-06 21.33 8.31 5.85 11.53 8.40 5.09 3.30
SCRI_RS_166540 2H 76.06 8.66 2.65E-06 18.48 5.19 7.84 7.32 11.07 3.07 4.61
SCRI_RS_15537 2H 108.00 8.27 3.51E-06 21.68 8.37 5.88 11.58 8.46 5.17 3.30
GBS1320 2H 127.05 4.65 4.07E-04 10.85 9.30 6.65 13.18 9.38 5.42 3.92
SCRI_RS_156155 2H 135.62 4.87 2.89E-04 13.93 8.31 6.28 11.62 8.92 4.99 3.63
BOPA2_12_30677 3H 68.24 9.02 2.65E-06 19.06 5.45 8.04 7.69 11.32 3.21 4.76
SCRI_RS_198609 3H 78.36 5.45 1.17E-04 13.16 8.02 6.03 11.32 8.50 4.72 3.56
BOPA2_12_20156 4H 51.42 9.88 7.40E-07 21.59 4.51 7.66 5.82 10.97 3.20 4.34
SCRI_RS_106799 4H 67.71 3.70 2.08E-03 9.11 6.05 7.68 8.76 10.60 3.34 4.76
SCRI_RS_138835 4H 86.37 7.68 7.95E-06 18.23 8.35 5.94 11.61 8.49 5.10 3.39
SCRI_RS_138556 5H 44.24 4.16 9.50E-04 12.69 8.30 6.39 11.35 9.15 5.26 3.63
SCRI_RS_225268 5H 98.63 6.65 2.02E-05 18.77 5.46 7.74 7.78 10.88 3.14 4.61
SCRI_RS_212515 5H 112.92 8.55 2.65E-06 20.50 5.25 7.85 7.21 11.20 3.29 4.49
BOPA1_2726–852 5H 169.38 6.99 1.55E-05 15.81 5.27 7.68 7.50 10.80 3.03 4.56
GBS2693 7H 97.10 6.61 2.02E-05 19.92 5.24 7.75 7.22 11.06 3.25 4.44
GBS2889 7H 118.48 3.84 1.65E-03 7.97 8.57 6.51 12.12 9.17 5.03 3.86
Sum 44.97
LA SCRI_RS_218473 1H 103.82 4.40 2.52E-02 11.16 41.58 60.22 62.69 91.05 20.46 29.38 0.18 0.05
SCRI_RS_187638 2H 0.00 3.81 6.29E-02 5.11 65.94 48.35 99.44 72.82 32.44 23.89
BOPA1_5347–585 2H 94.90 3.67 6.41E-02 7.52 45.33 61.03 68.80 92.33 21.86 29.73
SCRI_RS_185506 2H 118.97 5.13 1.05E-02 9.95 73.36 49.33 114.20 73.87 32.52 24.79
SCRI_RS_155734 2H 127.20 6.04 5.20E-03 11.81 76.03 48.97 118.29 73.02 33.76 24.92
GBS5976 4H 111.23 5.58 7.45E-03 14.61 74.16 48.79 118.05 72.45 30.27 25.14
Sum 37.85
LAms SCRI_RS_218473 1H 103.82 6.89 1.21E-04 19.19 18.68 29.58 26.57 42.04 10.79 17.12 0.19 0.06
BOPA1_5347–585 2H 94.90 2.81 2.11E-02 5.66 22.39 28.61 32.01 40.53 12.76 16.70
SCRI_RS_155734 2H 127.20 10.60 1.43E-07 19.25 39.44 22.94 57.63 32.09 21.25 13.79
GBS5976 4H 111.23 7.43 5.25E-05 18.51 36.34 23.11 52.78 32.39 19.90 13.83
GBS2037 5H 95.00 5.58 9.38E-04 12.55 38.75 23.95 54.28 34.13 23.22 13.76
GBS1267 6H 117.99 4.68 2.18E-03 12.33 20.87 29.15 28.82 41.91 12.92 16.39
Sum 40.28
HI SCRI_RS_182431 1H 55.67 19.96 2.83E-17 69.78 0.31 0.18 0.30 0.16 0.32 0.21 0.38 0.07
SCRI_RS_17898 2H 73.73 19.66 2.83E-17 68.74 0.18 0.31 0.15 0.29 0.20 0.32
SCRI_RS_3125 3H 89.87 13.49 1.55E-12 47.99 0.31 0.19 0.29 0.18 0.32 0.21
SCRI_RS_158234 7H 68.06 19.06 5.91E-17 67.70 0.17 0.30 0.15 0.29 0.19 0.31
Sum 89.46
RDMmsDM SCRI_RS_198546 1H 50.57 32.38 8.99E-30 70.63 0.68 0.49 0.65 0.36 0.71 0.61 0.21 0.05
SCRI_RS_17898 2H 73.73 30.21 1.54E-28 66.26 0.48 0.66 0.35 0.62 0.61 0.70
SCRI_RS_15537 2H 108.00 29.17 1.09E-27 62.13 0.47 0.65 0.33 0.60 0.60 0.70
BOPA1_3791–1525 3H 87.39 23.65 1.00E-22 50.21 0.67 0.51 0.62 0.39 0.71 0.62
BOPA2_12_30619 5H 98.72 23.27 2.26E-22 50.19 0.71 0.53 0.68 0.43 0.73 0.63
BOPA2_12_30067 5H 121.46 25.61 1.75E-24 53.28 0.70 0.52 0.67 0.41 0.73 0.63
BOPA1_8048–952 6H 62.75 27.62 2.98E-26 58.45 0.69 0.51 0.66 0.40 0.72 0.62
SCRI_RS_160279 7H 70.54 32.31 8.99E-30 70.43 0.68 0.49 0.65 0.37 0.72 0.61
Sum 92.39
RDMsDMr BOPA1_7803–483 3H 142.63 5.34 1.40E-06 67.47 0.67 0.55 0.69 0.53 0.66 0.57 0.00 0.00
Sum       67.47            

Refer to Table 1 for all acronyms and units. Allele represents the average marker population value. WW allele 1 and 2: means of the populations with allele 1 respectively allele 2 present under well-watered condition; DS allele 1 and 2: means of the populations with allele 1 respectively allele 2 present under drought stressed condition. Pos.: position (cM); chr.: Chromosome; H2: heritability; H2se: standard error of the broad sense heritability; LOD: log of odds; FDR: False discovery rate