Skip to main content
. 2020 Aug 27;15(8):e0237834. doi: 10.1371/journal.pone.0237834

Table 4. Significant marker-trait associations detected under well-watered and drought stress conditions in the generative stage experiments for Barley genotypes.

Trait Marker Chr Pos LOD FDR Expl. Gen. Variance Allele 1 Allele 2 WW Allele 1 WW Allele 2 WS Allele 1 WS Allele 2 H2 H2se
DME BOPA1_5346–1587 1H 36.97 3.59 1.63E-03 18.00 2.52 1.90 3.07 2.28 1.98 1.53 0.36 0.09
SCRI_RS_182631 1H 46.81 7.79 1.51E-06 40.52 2.78 1.81 3.28 2.19 2.27 1.42
BOPA2_12_30191 1H 100.07 4.91 4.54E-02 29.55 1.98 2.35 2.33 2.69 1.63 2.01
BOPA2_12_11454 3H 64.87 12.17 3.62E-09 60.75 1.32 2.41 1.84 2.82 0.80 2.00
BOPA2_12_21003 4H 40.01 9.21 1.99E-07 45.99 1.49 2.45 1.94 2.86 1.03 2.05
Sum         85.10            
DMEms SCRI_RS_182631 1H 46.81 8.52 1.99E-07 42.89 1.34 0.63 1.96 0.88 0.73 0.38 0.17 0.10
BOPA2_12_10689 2H 89.94 8.60 1.73E-07 32.59 0.32 1.04 0.78 1.35 -0.13 0.73
GBS6049 3H 20.40 7.72 7.94E-07 45.60 0.32 1.06 0.70 1.39 -0.07 0.73
BOPA2_12_11454 3H 64.87 11.65 6.01E-09 55.74 0.28 1.08 0.71 1.40 -0.16 0.77
BOPA1_3131–1029 4H 51.42 11.33 8.49E-09 52.16 0.28 1.08 0.74 1.38 -0.18 0.78
BOPA2_12_30226 4H 76.27 9.60 5.36E-08 39.03 0.25 1.03 0.72 1.34 -0.22 0.72
BOPA1_ABC20090-1-1-275 4H 87.70 9.26 7.06E-08 41.78 0.47 1.15 0.81 1.51 0.13 0.78
BOPA2_12_31200 4H 112.54 10.14 2.94E-08 47.69 0.29 1.06 0.66 1.40 -0.08 0.72
SCRI_RS_157897 5H 98.13 9.29 7.06E-08 42.07 1.16 0.50 1.65 0.70 0.66 0.29
SCRI_RS_1928 5H 168.89 11.83 6.01E-09 50.69 1.42 0.61 2.11 0.83 0.72 0.39
GBS5031 6H 77.54 9.09 8.28E-08 50.45 1.55 0.70 2.40 0.91 0.69 0.49
SCRI_RS_177168 6H 116.01 10.18 2.94E-08 42.24 1.18 0.49 1.66 0.72 0.70 0.26
SCRI_RS_179528 7H 20.96 9.07 8.28E-08 52.74 1.26 0.59 1.90 0.79 0.63 0.40
SCRI_RS_172335 7H 48.44 8.90 1.05E-07 45.85 0.45 1.11 0.72 1.52 0.18 0.71
GBS6627 7H 67.92 10.69 2.24E-08 55.47 1.61 0.68 2.51 0.89 0.70 0.48
Sum         103.29            
DMEt BOPA2_12_30191 1H 100.07 4.91 4.54E-02 29.55 1.98 2.35 2.33 2.69 1.63 2.01 0.01 0.13
SCRI_RS_56976 1H 52.48 6.67 6.92E-05 48.53 1.14 1.68 1.43 2.00 0.86 1.36
SCRI_RS_160616 2H 86.86 6.61 6.92E-05 48.01 1.71 1.16 2.05 1.44 1.36 0.87
BOPA2_12_11454 3H 64.87 8.09 3.47E-05 61.40 0.81 1.49 1.14 1.81 0.49 1.17
BOPA2_12_21003 4H 40.01 6.71 6.92E-05 48.26 0.97 1.51 1.26 1.82 0.69 1.21
BOPA2_12_30930 5H 126.13 6.84 6.92E-05 50.87 1.62 1.10 1.98 1.36 1.26 0.83
Sum 90.09  
DM BOPA2_12_20403 5H 83.47 5.12 1.50E-02 21.82 4.94 5.99 5.86 6.84 4.02 5.14 0.00 0.00
BOPA2_12_11386 6H 59.92 5.01 3.84E-02 15.65 4.84 5.75 5.90 6.60 3.78 4.89
Sum         21.82            
DMEt SCRI_RS_158234 7H 68.06 14.75 9.74E-12 61.83 1.67 1.19 1.94 1.40 1.41 0.99 0.00 0.00
Sum         61.83            
DMSt SCRI_RS_158234 7H 68.06 12.41 2.15E-09 48.17 1.95 1.55 2.30 1.91 1.60 1.19 0.00 0.00
Sum         48.17            
DMLG BOPA2_12_11300 4H 34.56 4.61 1.32E-01 23.53 12.78 5.27 21.68 9.95 3.87 0.59 0.08 0.10
Sum         23.53            
RDMmsDM SCRI_RS_182631 1H 46.81 11.53 2.46E-09 49.38 0.18 0.45 0.35 0.43 0.00 0.46 0.22 0.11
BOPA1_9701–925 2H 113.88 11.63 2.46E-09 42.44 0.20 0.46 0.36 0.43 0.04 0.48
GBS5497 3H 49.29 8.74 2.80E-07 46.16 0.26 0.49 0.37 0.43 0.14 0.56
BOPA1_3791–1525 3H 87.39 7.81 1.46E-06 37.69 0.27 0.48 0.38 0.43 0.16 0.54
GBS5051 4H 25.85 5.48 9.11E-05 34.44 0.31 0.52 0.39 0.42 0.22 0.62
SCRI_RS_209362 4H 35.91 5.05 1.85E-04 29.00 0.57 0.33 0.43 0.40 0.70 0.26
SCRI_RS_169138 5H 8.61 3.41 3.40E-03 23.75 0.49 0.33 0.43 0.40 0.55 0.26
GBS6178 5H 34.24 5.30 1.20E-04 32.24 0.54 0.31 0.42 0.39 0.66 0.23
BOPA2_12_30067 5H 121.46 12.21 1.65E-09 56.54 0.24 0.48 0.37 0.43 0.11 0.53
SCRI_RS_205578 6H 116.15 12.62 1.29E-09 55.23 0.21 0.47 0.36 0.43 0.07 0.51
SCRI_RS_179528 7H 20.96 11.50 2.46E-09 50.15 0.20 0.46 0.36 0.43 0.05 0.49
SCRI_RS_213842 7H 57.93 11.83 2.46E-09 50.43 0.23 0.47 0.36 0.43 0.09 0.52
GBS4229 7H 70.61 11.28 3.19E-09 56.05 0.23 0.49 0.36 0.43 0.09 0.54
BOPA1_1847–1745 7H 140.86 3.57 2.58E-03 18.70 0.33 0.52 0.40 0.41 0.26 0.63
Sum         95.83            
NLG SCRI_RS_8671 2H 104.60 4.29 8.12E-02 22.87 3.37 5.86 5.39 9.58 1.34 2.14 0.06 0.11
SCRI_RS_143317 6H 72.24 4.26 8.12E-02 19.87 8.66 4.03 14.20 6.53 3.11 1.53
Sum 48.31  
HI SCRI_RS_198546 1H 50.57 11.34 8.15E-09 62.60 0.62 0.31 0.79 0.25 0.45 0.38 0.02 0.09
SCRI_RS_127646 1H 116.29 8.98 3.01E-07 56.03 0.23 0.58 0.11 0.75 0.36 0.41
SCRI_RS_8671 2H 104.60 6.14 3.29E-05 57.21 0.62 0.42 0.79 0.52 0.46 0.33
BOPA1_2372–703 3H 60.84 13.64 1.25E-10 68.79 0.29 0.60 0.18 0.80 0.39 0.40
GBS1299 4H 0.78 5.18 1.57E-04 29.72 0.62 0.42 0.75 0.53 0.50 0.31
GBS3110 5H 84.50 4.97 2.28E-04 31.77 0.73 0.48 0.85 0.59 0.62 0.36
GBS3671 5H 92.36 5.00 2.20E-04 31.77 0.73 0.48 0.85 0.60 0.62 0.37
BOPA2_12_30067 5H 121.46 5.61 8.08E-05 47.22 0.63 0.44 0.75 0.59 0.52 0.28
SCRI_RS_11024 5H 168.54 6.55 1.61E-05 49.69 0.25 0.57 0.12 0.73 0.39 0.40
GBS4297 6H 87.61 5.20 1.55E-04 27.54 0.62 0.42 0.74 0.52 0.50 0.31
SCRI_RS_158126 7H 67.78 10.20 3.30E-08 62.73 0.59 0.28 0.78 0.17 0.40 0.38
SCRI_RS_158234 7H 68.06 12.95 3.01E-10 82.09 0.43 0.37 0.44 0.36 0.41 0.38
Sum         94.89            
Lms GBS1779 1H 46.60 6.77 4.56E-04 37.95 66.38 55.57 66.78 56.87 65.99 54.26 0.30 0.09
BOPA1_11603–445 1H 61.00 4.34 9.82E-03 31.71 54.42 63.81 55.85 64.32 52.99 63.29
BOPA1_8889–842 2H 55.38 4.71 6.99E-03 33.20 52.10 63.38 51.64 64.39 52.55 62.37
GBS7407 3H 52.03 5.70 2.43E-03 25.23 69.61 57.88 70.76 58.47 68.45 57.29
SCRI_RS_206361 4H 60.55 3.67 2.37E-02 15.13 58.15 66.18 58.73 67.15 57.58 65.20
GBS5709 4H 109.04 4.41 9.52E-03 24.73 54.04 63.93 55.25 64.34 52.84 63.52
BOPA1_1769–545 6H 17.01 3.15 4.01E-02 18.15 57.77 64.91 58.49 65.77 57.05 64.06
SCRI_RS_111979 7H 12.75 4.56 8.20E-03 24.08 65.73 56.70 65.93 57.45 65.53 55.95
GBS4748 7H 109.92 7.12 4.15E-04 44.95 65.67 54.60 66.95 54.53 64.38 54.67
Sum         76.11            
PROL SCRI_RS_172266 3H 96.60 4.07 2.23E-02 15.66 33.71 20.06 2.11 1.67 65.31 38.46 0.01 0.10
SCRI_RS_161534 5H 130.90 3.97 2.57E-02 13.47 34.53 20.24 1.76 1.80 67.30 38.69
GBS4530 7H 131.59 5.79 9.09E-03 21.10 44.08 20.85 1.57 1.83 86.59 39.87
Sum         43.92            
WSC SCRI_RS_7517 2H 72.59 3.92 2.15E-01 19.11 304.74 219.99 329.10 236.96 280.38 203.01 0.15 0.12
SCRI_RS_195137 4H 18.48 4.91 6.68E-02 24.01 302.77 217.51 312.39 236.32 293.16 198.71
Sum         37.12            

Refer to Table 1 for all acronyms and units. Allele represents the average marker population value. WW allele 1 and 2: means of the populations with allele 1 respectively allele 2 present under well-watered condition; DS allele 1 and 2: means of the populations with allele 1 respectively allele 2 present under drought stressed condition. Pos.: position (cM); chr.: Chromosome; H2: heritability; H2se: standard error of the broad sense heritability; LOD: log of odds; FDR: False discovery rate