. 2020 Aug 27;15(8):e0237834. doi: 10.1371/journal.pone.0237834

Table 5. Significant marker-trait associations for relative values explaining the phenotypic plasticity of different physiological and morphological traits of barley genotypes after water deficit treatment during the generative growth stage.

Trait	Marker	Chr	Pos	LOD	FDR	Expl. Gen. Variance	Allele 1	Allele 2	H²	H²_se
rPROL	GBS6990	2H	40.66	4.23	4.19E-02	9.36	162.60	69.43	0.99	0.00
	GBS2303	2H	51.20	6.35	1.25E-03	15.80	224.27	70.29
	BOPA2_12_30370	3H	139.67	4.41	3.13E-02	10.03	193.47	73.67
	GBS2307	6H	87.61	5.04	9.22E-03	12.90	153.32	65.79
	GBS785	7H	13.88	6.75	1.02E-03	16.71	172.44	65.41
	Sum					32.01
OA	SCRI_RS_15537	2H	108.00	5.08	1.76E-02	63.53	0.18	-0.07	0.03	0.11
	BOPA1_6951–875	2H	90.26	20.12	3.53E-19	39.96	-0.27	-0.01
	SCRI_RS_144379	2H	111.26	31.04	5.20E-29	55.39	-0.24	0.03
	BOPA1_6954–861	4H	52.96	30.84	7.50E-29	55.09	-0.28	0.01
	SCRI_RS_188829	4H	115.23	21.43	2.08E-20	44.94	0.06	-0.16
	BOPA1_8048–952	6H	62.75	34.78	9.43E-32	59.72	-0.24	0.03
	BOPA1_2924–1189	7H	70.68	32.94	3.06E-30	58.44	-0.22	0.04
	Sum					85.66
rWSC	GBS3887	2H	58.05	6.61	6.02E-04	14.62	1.45	1.05	0.14	0.09
	BOPA1_2822–739	2H	123.94	7.28	2.95E-04	9.64	1.16	0.79
	BOPA2_12_30895	7H	34.35	4.90	4.99E-03	10.13	0.66	0.96
	Sum					23.86
rBBCH	SCRI_RS_158234	7H	68.06	6.09	6.91E-04	72.23	0.97	1.04	0.00	0.00
rBBCH	Sum					72.23			0.00	0.00
rDME	SCRI_RS_183064	2H	110.91	14.71	3.53E-12	65.90	0.99	0.70	0.00	0.00
	BOPA1_ABC03113-1-1-251	5H	129.44	14.83	3.53E-12	66.46	1.04	0.72
	Sum					80.84
rDMEms	BOPA2_12_30191	1H	100.07	36.95	6.28E-34	71.57	0.60	1.21	0.08	0.11
	SCRI_RS_185710	2H	58.07	26.16	2.75E-24	57.46	0.77	1.24
	SCRI_RS_3125	3H	89.87	27.50	1.96E-25	58.94	0.80	1.26
	BOPA2_12_30158	4H	99.08	21.60	3.65E-20	54.44	0.78	1.23
	BOPA1_4773–1009	4H	112.33	28.82	4.18E-26	58.31	0.64	1.20
	SCRI_RS_167426	5H	143.96	6.78	1.00E-06	17.72	0.90	1.17
	BOPA1_2607–2929	6H	79.60	12.04	1.85E-11	30.80	1.25	0.93
	GBS5694	7H	69.26	28.35	7.00E-26	63.51	0.72	1.23
	Sum					93.51
rDMGLt	BOPA2_12_20489	2H	72.45	8.24	3.04E-05	44.53	2.09	0.36	0.18	0.15
rDMGLt	Sum					44.53			0.18	0.15
rDMLSms	BOPA2_12_30191	1H	100.07	39.00	5.56E-36	74.90	2.06	1.10	0.17	0.10
	GBS6733	2H	58.78	26.11	5.41E-24	62.34	1.77	1.05
	SCRI_RS_143727	2H	107.15	15.99	7.00E-15	45.15	1.74	1.11
	GBS6415	4H	40.01	28.93	2.16E-26	64.27	2.02	1.11
	SCRI_RS_179438	4H	73.65	7.02	8.60E-07	13.66	1.10	1.49
	SCRI_RS_209980	5H	44.24	8.88	1.82E-08	18.80	1.58	1.13
	SCRI_RS_143508	5H	93.65	11.36	9.67E-11	29.58	0.99	1.49
	SCRI_RS_198617	5H	96.25	5.85	9.07E-06	12.86	1.61	1.19
	BOPA2_12_11386	6H	59.92	21.97	2.00E-20	49.09	2.18	1.18
	GBS4671	6H	117.55	15.57	1.65E-14	43.26	1.71	1.10
	GBS5694	7H	69.26	28.58	3.63E-26	63.00	1.85	1.07
	BOPA1_3140–491	7H	77.97	4.16	2.73E-04	10.62	0.93	1.36
	Sum					96.93
rNLG	BOPA2_12_10717	2H	65.37	24.23	3.12E-21	83.75	6.00	0.42	0.38	0.11
rNLG	Sum					83.75			0.38	0.11
rRDMEmsDME	GBS6407	1H	54.89	32.22	1.44E-30	68.92	1.11	1.71	0.12	0.11
	BOPA1_3598–489	2H	50.92	28.22	7.80E-27	61.22	1.79	1.21
	SCRI_RS_237688	2H	57.17	18.97	3.31E-18	44.84	1.01	1.58
	SCRI_RS_17898	2H	73.73	40.94	1.59E-38	74.49	1.73	1.10
	SCRI_RS_17898	2H	73.73	40.94	1.59E-38	74.49	1.73	1.10
	BOPA1_ConsensusGBS0508-1	3H	51.35	21.90	6.05E-21	50.47	1.04	1.60
	GBS881	6H	28.47	24.90	1.01E-23	57.47	1.11	1.67
	SCRI_RS_158126	7H	67.78	42.67	3.99E-40	75.94	1.09	1.73
	SCRI_RS_158234	7H	68.06	45.63	1.32E-42	78.90	1.76	1.12
	Sum					95.88
rRDMmsDM	BOPA2_12_30191	1H	100.07	31.30	2.81E-28	66.81	1.20	1.29	0.00	0.12
	SCRI_RS_185710	2H	58.07	24.24	1.62E-22	55.04	1.22	1.30
	GBS2300	2H	80.95	20.69	2.43E-19	52.61	1.20	1.29
	SCRI_RS_3125	3H	89.87	28.76	4.86E-26	61.50	1.23	1.30
	SCRI_RS_135425	5H	45.21	13.61	6.08E-13	35.93	1.31	1.25
	GBS6627	7H	67.92	14.19	1.76E-13	38.82	1.20	1.28
	GBS5694	7H	69.26	27.16	9.78E-25	62.90	1.21	1.29
	BOPA2_12_31513	7H	70.96	23.65	5.44E-22	55.50	1.22	1.29
	SCRI_RS_204144	7H	70.96	15.60	1.01E-14	40.75	1.24	1.30
	Sum					95.90
rDMSt	BOPA2_12_30191	1H	100.07	35.67	1.20E-32	71.11	0.63	0.80	0.01	0.12
	SCRI_RS_185710	2H	58.07	26.15	2.05E-24	58.42	0.68	0.81
	GBS2300	2H	80.95	20.34	4.55E-19	50.53	0.64	0.80
	SCRI_RS_3125	3H	89.87	28.91	1.73E-26	61.75	0.69	0.82
	SCRI_RS_232881	5H	45.21	12.59	5.51E-12	33.62	0.82	0.73
	BOPA2_12_30857	6H	56.16	9.14	7.06E-09	24.41	0.81	0.73
	GBS5694	7H	69.26	29.56	7.74E-27	65.05	0.66	0.81
	BOPA2_12_31513	7H	70.96	22.16	1.14E-20	49.59	0.67	0.80
	SCRI_RS_204144	7H	70.96	13.67	5.45E-13	36.40	0.71	0.81
	Sum					96.09
rNt	BOPA2_12_30191	1H	100.07	29.51	2.43E-27	63.09	0.93	1.07	0.00	0.12
	SCRI_RS_237688	2H	57.17	26.25	1.58E-24	58.13	0.95	1.07
	SCRI_RS_9469	2H	67.92	29.94	1.59E-27	62.18	1.10	0.99
	SCRI_RS_3125	3H	89.87	29.65	2.09E-27	61.96	0.97	1.08
	SCRI_RS_158234	7H	68.06	32.47	1.90E-29	65.29	1.09	0.98
	Sum					92.74
SLAt	SCRI_RS_196910	1H	117.49	5.14	2.02E-02	14.62	129.62	157.98	0.00	0.00
	SCRI_RS_171038	2H	80.59	3.50	4.21E-02	10.76	135.44	157.53
	SCRI_RS_106163	2H	129.75	3.85	4.17E-02	10.26	163.47	139.19
	SCRI_RS_137464	6H	55.67	3.47	4.25E-02	8.92	134.37	156.79
	BOPA1_6541–1329	7H	100.00	5.26	2.02E-02	14.59	172.29	140.09
	Sum					40.95

Allele represents the average marker population value. Refer to Table 1 for all acronyms and units. Allele 1 and 2: means of the populations with allele 1 respectively allele 2. Pos.: position (cM); chr.: Chromosome; H²: heritability; H²_se: standard error of the broad sense heritability; LOD: log of odds; FDR: False discovery rate