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. 2020 Aug 27;15(8):e0237834. doi: 10.1371/journal.pone.0237834

Table 6. Significant marker-trait associations for relative values explaining the phenotypic plasticity of different physiological and morphological traits of barley genotypes after water deficit treatment during the vegetative growth stage.

Trait Marker Chr Pos LOD FDR Expl. Gen. Variance Allele 1 Allele 2 H2 H2se
rDM SCRI_RS_9469 2H 67.92 5.69 2.14E-03 74.95 0.55 0.66 0.00 0.00
Sum         74.95    
rDMGLt BOPA1_4665–882 1H 67.92 13.16 4.64E-11 70.57 1.53 0.18 0.83 0.05
BOPA2_12_30191 1H 100.07 13.65 4.64E-11 71.41 1.58 0.20
GBS7416 2H 56.73 13.23 4.64E-11 69.71 1.61 0.26
GBS6809 2H 67.49 13.00 5.86E-11 70.16 -0.02 1.23
Sum         92.43    
rLAFL1ms BOPA2_12_31034 5H 48.33 7.26 9.08E-05 43.25 1.57 1.01 0.99 0.00
Sum         43.25    
RLALGt GBS1230 2H 58.07 13.08 1.30E-10 68.54 1.14 0.14 0.78 0.07
GBS6809 2H 67.49 12.18 1.94E-10 69.10 -0.06 0.84
GBS5733 4H 51.13 13.14 1.30E-10 67.71 1.31 0.18
Sum         94.70    
rDMLG SCRI_RS_219740 2H 56.37 4.85 5.97E-03 65.36 0.69 0.47 0.00 0.00
Sum         65.36    
rRDMmsDM GBS508 4H 51.27 7.64 3.42E-05 76.30 1.19 1.69 0.00 0.00
Sum         76.30    
rLA SCRI_RS_120501 5H 168.54 3.76 1.45E-02 52.64 0.44 0.33 0.00 0.00
Sum 52.64
rNLG SCRI_RS_9469 2H 67.92 4.44 2.42E-02 72.96 0.41 0.57 0.04 0.14
GBS4361 5H 119.93 5.94 6.29E-03 23.70 0.64 0.41
Sum         72.96    
rDMGLt GBS1230 2H 58.07 21.13 4.05E-18 68.64 1.11 0.33 0.21 0.12
GBS2119 2H 58.92 17.38 1.42E-15 60.72 0.97 0.31
GBS5051 4H 25.85 12.45 2.31E-11 50.91 0.82 0.28
GBS5473 4H 43.48 13.08 7.71E-12 50.22 0.88 0.30
GBS3009 4H 44.00 20.46 4.74E-18 67.29 1.06 0.32
GBS5733 4H 51.13 20.71 4.74E-18 68.18 1.29 0.37
SCRI_RS_239145 4H 60.55 4.72 1.17E-04 33.49 0.23 0.70
Sum         92.37    
rDMLSms BOPA2_12_30968 1H 0.00 5.36 2.41E-02 20.00 8.34 2.09 0.89 0.02
BOPA2_12_20505 3H 139.31 4.77 4.69E-02 17.77 6.91 2.05
Sum         32.51    
rDMLSt GBS2306 7H 1.91 5.42 2.10E-02 23.30 15.49 2.46 0.96 0.01
Sum         23.30    
rDMSms SCRI_RS_165334 3H 108.57 6.35 2.45E-03 23.42 1.01 0.71 0.07 0.13
Sum         23.42    
rDMSt GBS4766 5H 70.14 4.96 6.69E-03 2.85 6.98 0.54 0.92 0.01
GBS1121 7H 132.65 4.50 1.45E-02 18.91 1.50 0.53
Sum         19.25    
rLAFL2ms BOPA2_12_11285 2H 89.80 4.93 3.22E-02 20.47 3.22 0.96 0.58 0.06
GBS1162 6H 91.05 5.19 3.22E-02 22.84 4.04 0.98
Sum         35.48    
rLAFLms BOPA1_2277–634 2H 107.15 13.74 3.28E-11 51.96 1.06 0.91 0.01 0.15
SCRI_RS_183064 2H 110.91 14.03 2.50E-11 53.87 1.08 0.92
BOPA2_12_30926 3H 104.46 9.42 4.37E-08 38.24 1.06 0.93
BOPA1_3131–1029 4H 51.42 8.93 1.06E-07 32.68 0.80 0.99
BOPA2_12_20156 4H 51.42 14.38 2.26E-11 59.88 1.10 0.93
BOPA2_12_30226 4H 76.27 9.38 4.47E-08 34.39 0.78 0.99
SCRI_RS_7914 4H 103.97 7.74 8.01E-07 30.71 1.03 0.92
BOPA2_12_30067 5H 121.46 12.80 8.01E-11 49.98 1.09 0.93
SCRI_RS_166491 5H 137.22 8.30 3.11E-07 31.34 0.85 1.00
SCRI_RS_161288 6H 50.78 3.63 1.46E-03 14.94 1.03 0.94
SCRI_RS_196373 6H 52.90 3.53 1.76E-03 15.11 1.03 0.94
BOPA1_6487–1315 6H 55.03 7.67 9.31E-07 30.41 0.90 1.01
BOPA1_1914–936 6H 59.26 12.56 1.11E-10 48.51 1.05 0.91
SCRI_RS_81903 6H 72.95 6.87 3.83E-06 26.31 0.91 1.02
SCRI_RS_206976 6H 74.58 7.98 5.34E-07 32.77 1.05 0.93
BOPA1_1007–651 6H 115.93 4.56 2.65E-04 20.48 1.04 0.94
SCRI_RS_116905 7H 61.47 13.52 4.09E-11 53.24 1.09 0.93
BOPA1_ABC14535-1-1-75 7H 63.95 8.05 4.80E-07 33.58 1.07 0.94
GBS4229 7H 70.61 11.11 1.68E-09 46.78 1.09 0.93
Sum         98.85    
rLms GBS5720 2H 138.60 6.29 2.85E-03 25.30 1.39 0.76 0.16 0.12
Sum         25.30    
rLt GBS3514 5H 55.10 7.12 4.13E-04 28.98 1.28 0.60 0.07 0.13
Sum         28.98    
rNLG GBS4361 5H 119.93 5.94 6.29E-03 23.70 0.64 0.41 0.04 0.14
Sum         23.70    
rSLA GBS1319 2H 127.05 4.82 4.19E-02 19.65 1.06 0.69 0.06 0.14
BOPA2_12_30370 3H 139.67 9.65 1.23E-06 38.45 1.35 0.69
Sum         46.14    
rSLAt BOPA2_12_30370 3H 139.67 5.85 3.81E-03 30.81 2.11 0.67 0.28 0.11
BOPA2_12_31326 5H 4.17 7.05 4.85E-04 29.02 2.24 0.67
GBS7027 6H 99.15 4.91 1.35E-02 21.59 2.03 0.66
Sum         48.08    
rT GBS2202 1H 64.02 5.97 5.83E-03 24.31 1.32 0.74 0.06 0.13
GBS4670 5H 48.26 5.32 1.32E-02 21.14 1.29 0.73
Sum         37.45    

Refer to Table 1 for all acronyms and units. Allele represents the average marker population value for each allele. Refer to Table 1 for all acronyms and units. Allele 0 and 1: means of the populations with allele 0 respectively allele 1. Pos.: position (cM); chr.: Chromosome; H2: heritability; H2se: standard error of the broad sense heritability; LOD: log of odds; FDR: False discovery rate