Table 1. Comparison of Z. mobilis genome-scale metabolic models.
| Model: | iZM4_478 | ZmoMBEL601 | iZM363 | iZM411 | iEM439b |
|---|---|---|---|---|---|
| Reference: | (This Study) | [17] | [18] | [19] | [20] |
| Year of publication: | 2020 | 2010 | 2011 | 2018 | 2016 |
| Number of reactionsa | 747 | 591 | 739 | 648 | 755 |
| - Reactions w/ GPR | 612 | 498 | 414 | 507 | 593 |
| - Reactions w/o GPR | 135 | 93 | 325 | 141 | 162 |
| - Metabolic reactions w/o GPR | 19 | 64 | 182 | 89 | 106 |
| Number of genes | 478 | 353 | 363 | 360 | 439 |
| Number of metabolites | 616 | 579 | 600 | 602 | 658 |
Presented values are based on analysis performed with the model files included with the original publications to allow for a meaningful comparison between models and may not match values reported in these publications.
a Reaction counts exclude biomass and exchange reactions. Metabolic reactions further exclude transport reactions across the cellular membranes.
b iEM439 is a genome-scale metabolic model for ZM1.