Table 1. Naive sequence validation table.
| Sequence Region | Program | Sequence Type | |
|---|---|---|---|
| DNA | Amino-Acid | ||
| Full-sequence | linearham | 1.92 | 1.17 |
| (3.14) | (1.76) | ||
| partis | 4.81 | 3.02 | |
| (4.91) | (2.84) | ||
| ARPP | 2.24 | 1.39 | |
| (5.06) | (3.32) | ||
| CDR3-only | linearham | 1.66 | 1.08 |
| (2.89) | (1.69) | ||
| partis | 4.17 | 2.69 | |
| (3.70) | (2.29) | ||
| ARPP | 1.27 | 0.856 | |
| (1.78) | (1.18) | ||
Mean hamming distances between the simulated naive sequences and their corresponding estimates, where the hamming distances are averaged over all 180 simulated trees. Results are provided for the linearham, partis, and ARPP programs; the full-sequence and CDR3 regions; and the DNA/amino-acid sequence types. Standard errors are also presented in parentheses.