. 2020 Aug 27;9(35):e00686-20. doi: 10.1128/MRA.00686-20

TABLE 1.

Accession numbers and characteristics of genomes of the GM15 bacterial consortium

Isolate	Bacterial species	GenBank accession no.	SRA accession no.	Assembly size (bp)	No. of paired-end reads	GC content (%)	Genome coverage (×)	No. of contigs	N₅₀^a (bp)	Genome completeness^b
Isolate	Bacterial species	GenBank accession no.	SRA accession no.	Assembly size (bp)	No. of paired-end reads	GC content (%)	Genome coverage (×)	No. of contigs	N₅₀^a (bp)	C (%)	S (%)	D (%)	F (%)	M (%)	n
MD185	Bacteroides acidifaciens	VIRE00000000	SRR9696648	5,228,881	3,643,154	42.03	209	174	78,435	100.0	99.8	0.2	0.0	0.0	541
MD237	Bacteroides caecimuris	VIRD00000000	SRR9696649	4,824,756	3,072,634	41.91	191	93	111,017	100.0	99.8	0.2	0.0	0.0	541
MD294 (ASF356)	Clostridium sp.	VIRC00000000	SRR9696650	2,856,932	3,858,506	31.67	405	30	199,176	99.6	98.5	1.1	0.0	0.4	264
MD300 (ASF502)	Schaedlerella arabinosiphila	VIRB00000000	SRR9696651	6,346,609	2,802,822	43.21	132	186	90,162	100.0	100.0	0.0	0.0	0.0	264
MD335	Unclassified Lachnospiraceae sp.	VIRA00000000	SRR9696652	5,174,557	3,623,726	42.12	210	189	74,501	100.0	99.6	0.4	0.0	0.0	264
MD006	Lactobacillus johnsonii	VIQZ00000000	SRR9696653	1,938,179	4,121,376	35.70	638	43	79,219	99.5	99.0	0.5	0.2	0.3	402
MD040	Lactobacillus murinus	VIQY00000000	SRR9696654	2,224,369	3,265,244	39.77	440	130	35,268	99.5	99.3	0.2	0.2	0.3	402
MD207	Lactobacillus reuteri	VIQX00000000	SRR9696655	2,014,265	3,994,740	39.72	595	55	13,099	99.5	99.0	0.5	0.2	0.3	402
MD072	Parabacteroides goldsteinii	VIQW00000000	SRR9696656	6,910,815	3,871,748	42.38	168	115	109,394	100.0	99.6	0.4	0.0	0.0	541
MD329	Unclassified Lachnospiraceae sp.	VIQV00000000	SRR9696657	2,789,948	3,468,474	39.51	373	86	103,195	98.9	98.9	0.0	0.0	1.1	264
MD308	Unclassified Lachnospiraceae sp.	VIQU00000000	SRR9696644	4,443,317	2,742,248	40.71	185	162	89,086	98.9	98.9	0.0	0.0	1.1	264
DSM-28734 (JM4-15)	Anaerotruncus colihominis	VIQT00000000	SRR9696645	3,502,576	2,247,686	53.63	193	37	200,988	97.3	97.3	0.0	0.4	2.3	264
DSM-26114 (YL32)	Clostridium clostridioforme	VIQS00000000	SRR9696646	7,084,105	4,288,290	45.80	182	268	69,589	99.2	97.3	1.9	0.4	0.4	264
DSM-1551 (I50)	Clostridium cocleatum	VIQR00000000	SRR9696647	3,057,667	3,798,362	29.16	373	53	110,672	95.5	95.0	0.5	0.5	4.0	218
DSM-28618 (Mt1B1)	Escherichia coli	VIQQ00000000	SRR9696643	5,218,283	1,968,758	40.69	113	33	943,892	100.0	99.5	0.5	0.0	0.0	440

The N₅₀ value is the length of the shortest contig for which longer and equal-length contigs cover at least 50% of the assembly.

Genome completeness was assessed with BUSCO v4.0.6 (16) and is reported in BUSCO notation: C, complete; S, complete and single copy; D, complete and duplicated; F, fragmented; M, missing; n, total number of BUSCO groups searched.