TABLE 1.
Mutations detected in the SARS-CoV-2 strains in this study
| Nucleotide position | Ref. Basea | Mutant base | Mutation found in strain: |
Gene | Type of mutation | ||||
|---|---|---|---|---|---|---|---|---|---|
| P17157_1021 | P17157_1020 | P17157_1016 | P17157_1007 | P17157_1018b | |||||
| 219 | G | T | T | G | G | G | G | Noncoding | |
| 241 | C | T | T | T | T | T | T | Noncoding | |
| 1059 | C | T | T | T | T | C | T | ORF1a | T265I |
| 2659 | G | T | G | G | G | T | G | ORF1a | K798N |
| 2755 | G | T | G | T | G | G | G | ORF1a | Synonymous |
| 3037 | C | T | T | T | T | T | T | ORF1a | Synonymous |
| 3184 | A | G | A | A | G | A | A | ORF1a | Synonymous |
| 5147 | C | T | C | C | C | T | C | ORF1a | R1628C |
| 6285 | C | T | C | C | C | T | C | ORF1a | T2007I |
| 6352 | G | T | G | T | G | G | G | ORF1a | K2029N |
| 9193 | A | G | A | A | A | G | A | ORF1a | Synonymous |
| 11083 | G | T | G | G | G | T | G | ORF1a | L3606F |
| 11398 | T | G | T | T | T | G | T | ORF1a | Synonymous |
| 12915 | C | T | T | C | C | C | C | ORF1a | T4217I |
| 14408 | C | T | T | T | T | T | T | ORF1ab | P4715L |
| 21575 | C | T | C | C | T | C | C | S | L5F |
| 23202 | C | T | T | C | C | C | C | S | T547I |
| 23403 | A | G | G | G | G | G | G | S | D614G |
| 23463 | G | A | G | A | G | G | G | S | R634H |
| 24368 | G | T | T | T | T | G | G | S | D936Y |
| 25563 | G | T | T | T | T | G | T | ORF3a | Q57H |
| 27549 | C | T | C | C | C | T | C | ORF7a | Synonymous |
| 28881 | G | A | G | G | G | A | G | N | R203K |
| 28882 | G | A | G | G | G | A | G | N | R203K |
| 28883 | G | C | G | G | G | A | G | N | G204R |
| 28889 | T | C | T | C | T | T | T | N | S206P |
| 29287 | A | T | T | A | A | A | A | N | K338N |
a
Ref., reference.
b
Only accepted mutations found in the coding-complete genomes.