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. 2020 Aug 28;21:220. doi: 10.1186/s13059-020-02114-z

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — A considerable fraction of the identified genes (N = 308) affected multiple target CpGs in trans. a Each dot represents a gene with trans DNA methylation effects. The x-axis shows the number of affected target CpGs with decreased methylation levels upon increased gene expression, and the y-axis shows the number of affected target CpGs with increased methylation levels upon increased gene expression. The figure in the right upper corner is a zoomed-in version in which only genes that affect less than 25 CpG sites in either direction are displayed. b Bars represent the number of genes with either 1, 2, 3–5, or more than 5 target CpGs. The percentage of genes that are annotated as transcription factors increases with the number of target CpGs