Table 1.
Summary of samples and analyses
| Sample | Input reads | % reads post QC | % reads mapped | Reads (paired and clipped) | % reads on target (primary) | % reads on target (capture) | Coverage on target (primary) | Coverage on target (capture) |
|---|---|---|---|---|---|---|---|---|
| 10046_S2 | 5043578 | 90.39 | 78.71 | 3588074 | 54.01 | 54.31 | 209.99 | 220.84 |
| 10071_S7 | 5167738 | 89.08 | 83.62 | 3849392 | 44.54 | 44.81 | 186.40 | 196.12 |
| 10077_S3 | 4622790 | 90.13 | 81.18 | 3382228 | 52.35 | 52.66 | 198.17 | 208.34 |
| 10078_S8 | 4148304 | 89.91 | 83.59 | 3117970 | 33.13 | 50.13 | 175.26 | 184.27 |
| 10081_S4 | 4408742 | 89.53 | 81.99 | 3236368 | 50.31 | 50.60 | 186.37 | 195.79 |
| 10082_S5 | 4146244 | 88.90 | 82.83 | 3053058 | 48.82 | 49.10 | 171.00 | 179.62 |
| 10086_S6 | 4665150 | 89.39 | 80.91 | 3373894 | 49.76 | 50.06 | 186.09 | 195.68 |
| 10088_S2 | 5683572 | 88.12 | 83.26 | 4169990 | 49.01 | 49.29 | 219.04 | 230.48 |
| 10097_S3 | 5372752 | 87.46 | 84.09 | 3951544 | 44.74 | 45.00 | 195.13 | 205.17 |
| 10107_S1 | 4659718 | 89.67 | 80.24 | 3352898 | 55.68 | 56.00 | 213.95 | 224.78 |
| 10110_S6 | 5369964 | 86.87 | 82.21 | 3835038 | 47.17 | 47.45 | 199.76 | 210.11 |
| 10113_S7 | 3862862 | 89.44 | 83.54 | 2886124 | 36.11 | 36.31 | 120.48 | 126.52 |
| 10117_S5 | 4243470 | 89.93 | 85.80 | 3274194 | 46.15 | 46.42 | 169.10 | 177.78 |
| 10126_S7 | 5490894 | 87.68 | 83.36 | 4013294 | 44.39 | 44.65 | 198.79 | 209.00 |
| 10131_S1 | 5338282 | 87.00 | 82.62 | 3836988 | 53.58 | 53.88 | 232.54 | 244.35 |
| 10146_S6 | 4326882 | 90.13 | 85.57 | 3337118 | 45.47 | 45.73 | 168.34 | 177.00 |
| 10149_S7 | 4129130 | 90.01 | 84.46 | 3139126 | 45.78 | 46.04 | 159.55 | 167.77 |
| 10155_S5 | 4450890 | 86.31 | 84.99 | 3264796 | 46.65 | 46.91 | 170.60 | 179.37 |
| 20011_S4 | 5923516 | 87.27 | 85.49 | 4419628 | 41.19 | 41.42 | 203.82 | 214.20 |
| 20019_S1 | 3972578 | 89.46 | 84.62 | 3007020 | 49.39 | 49.68 | 163.80 | 172.27 |
| 20022_S4 | 7091616 | 88.48 | 81.02 | 5083584 | 47.19 | 47.47 | 257.88 | 271.25 |
| 20023_S1 | 7854298 | 88.16 | 81.78 | 5662728 | 43.72 | 43.98 | 269.47 | 283.35 |
| 20024_S5 | 6284900 | 88.04 | 82.23 | 4549698 | 41.85 | 42.09 | 215.05 | 225.92 |
| 20062_S2 | 3554848 | 88.54 | 84.13 | 2648098 | 40.36 | 40.54 | 127.76 | 133.78 |
| 20068_S3 | 3355298 | 89.51 | 84.38 | 2534292 | 48.89 | 49.18 | 138.43 | 145.54 |
| 20078_S2 | 7541786 | 88.33 | 84.85 | 5651984 | 38.94 | 39.16 | 246.67 | 259.20 |
| 20088_S4 | 4083996 | 90.28 | 84.33 | 3109332 | 33.27 | 33.46 | 114.79 | 120.70 |
| 20092_S3 | 4686060 | 89.01 | 83.38 | 3477852 | 50.58 | 50.88 | 196.38 | 206.39 |
| 20098_S1 | 4501632 | 88.21 | 83.23 | 3305210 | 53.58 | 53.89 | 197.69 | 207.78 |
| 20106_S2 | 4430250 | 86.96 | 83.43 | 3214408 | 45.12 | 45.32 | 173.69 | 181.84 |
| 20117_S4 | 4802994 | 88.70 | 86.01 | 3664364 | 44.22 | 44.48 | 178.18 | 187.37 |
| 20119_S5 | 4525080 | 89.19 | 85.57 | 3453670 | 46.90 | 47.16 | 180.35 | 189.59 |
| 20122_S6 | 4741150 | 88.79 | 85.18 | 3585870 | 51.76 | 52.07 | 204.62 | 215.16 |
| 20160_S3 | 5848296 | 88.30 | 84.30 | 4353508 | 46.02 | 46.28 | 220.04 | 231.29 |