Skip to main content
. 2020 Aug 28;11:4321. doi: 10.1038/s41467-020-18063-x

Fig. 1. Rc XMod-Doc:Coh complex, dual-binding modes, and molecular dynamics simulation of complex dissociation.

Fig. 1

a The Rc-cellulosomal network is assembled through interactions between Doc and Coh domains. Cellulose-binding domains, digestive enzymes, and structural scaffold proteins (Sca) self-assemble into a cellulosome complex, which binds and digests cellulose fibers in the human gut. XMod-DocB and CohE form a mechanically stable protein complex that anchors the cellulosomal network to the cell surface. b, c Structural models showing the XMod-Doc:Coh complex in the two hypothesized-binding modes. Green: Coh, blue: Doc, purple: XMod. Calcium ions are shown as black spheres. In both binding modes, the rupture forces observed for the five most stable models were measured by performing 200 steered molecular dynamics (SMD) replicas and plotting as histograms. The pulling directions are marked by black arrows. Rupture force histograms were fitted with Gaussian distributions. The most probable rupture force was 981 pN in binding mode A (panel b) and 575 pN in binding mode B (panel c) at a pulling speed of 5.0 Å ns−1.