Table 3.
Intersecting mRNAs between mRNA in triplets and DEGs.
| Ensembl ID | LncRNA | TF symbol | Gene symbol |
|---|---|---|---|
| symbol | |||
| ENST00000304425 | MIR31HG | SMAD2 | FBLIM1, ACTN1, MYO1B |
| E2F6 | GPR68 | ||
| E2F4 | FABP5 | ||
| NFKB1 | DDX60, HELZ2, IFIH1 | ||
| SMARCC1 | HSPB3 | ||
| SMAD4 | MYO1B | ||
| SMARCA4 | ITGA3, PYGL | ||
| EP300 | GAMT | ||
| ENST00000331944 | LINC00152 | SMAD2 | FBLIM1, ACTN1, MYO1B |
| E2F6 | GPR68 | ||
| E2F4 | FABP5 | ||
| NFKB1 | DDX60, HELZ2, IFIH1 | ||
| SMARCC1 | HSPB3 | ||
| STAT1 | ACP5 | ||
| ENST00000453722 | LINC00511 | SMAD2 | FBLIM1, ACTN1, MYO1B |
| ENST00000457958 | |||
| E2F6 | GPR68 | ||
| E2F4 | FABP5 | ||
| SMARCA4 | ITGA3, PYGL | ||
| STAT1 | ACP5 | ||
| REST | TNC | ||
| CEBPA | S100A12 | ||
| MYC | SLC7A5 | ||
| ENST00000446406 | H19 | ERG | SORBS1 |
| NFYB | AMOT, SLC2A4, DEPTOR, ADH1C, ACTN1 | ||
| RARA | TRIM55, LIMCH1 | ||
| E2F1 | ACTN1 | ||
| PPARGC1A | ATP1A2 | ||
| TAF1 | ZNF106 | ||
| STAT1 | MLXIPL | ||
| ENST00000595005 | CTD- | ERG | SORBS1 |
| 2545M3.8 | NFYB | AMOT, SLC2A4, DEPTOR, ADH1C, ACTN1 | |
| ZNF711 | SLC25A4 | ||
| AR | XIRP1 | ||
| ENST00000466343 | RP4- | ERG | SORBS1 |
| 791M13.3 | NFYB | AMOT, SLC2A4, DEPTOR, ADH1C, ACTN1 | |
| RARA | TRIM55, LIMCH1 | ||
| SMAD2 | CDH3, MYO1B, SLC7A5, ACTN1 | ||
| CEBPA | S100A12, PDZK1IP1 | ||
| TCF7L2 | USP13 | ||
| E2F4 | PYGL | ||
| MED12 | LIMCH1 | ||
| ENST00000520544 | RP11- | ERG | SORBS1 |
| 760H22.2 | NFYB | AMOT, SLC2A4, DEPTOR, ADH1C, ACTN1 | |
| RARA | TRIM55, LIMCH1 | ||
| E2F1 | ACTN1 | ||
| SMAD2 | CDH3, MYO1B, SLC7A5, ACTN1 | ||
| CEBPA | S100A12, PDZK1IP1 | ||
| TCF7L2 | USP13 | ||
| E2F4 | PYGL | ||
| ESR2 | ASB16 | ||
| MYC | PYGL | ||
| E2F6 | ACTN1 | ||
| TFAP2C | CPA4 |