TABLE 1.

Gene specific primers used for qPCR.

Accession no.	Current name	Alt. Name	Forward 5′ -> 3′	Reverse 5′ -> 3′
KT008391	Exorhodopsin		GTA CGC TCC GCT ATC CCA TA	ACG TGT GAA AGC CCC TAC TG
KT008402	Valopa	Val	ACT TCC ACG ACC ACA CCT TC	CGG ATG AGT TTG CAG TAG CA
KT008403	Valopb	Va2	GGC GAG GAT GGT CGT TGT AA	ATG CTG CAT AAG GCG TCC AT
KT008404	parapinopsin-1		CTG TGG TCG TTC ATC TGG AA	GGC CAG ATC TCT GCT GTA CC
KT008405	parapinopsin-2		GCA GCA CTG TAT ACA ACC CCT	ATA CGT CGT CCT CTG AAG GC
KT008406	parietopsin		TGT TGG CGT ATG AGC GTT AT	AGC CAT ACC AAC AGC AGA CC
KT008407	TMTla	tmt6	TGT TAC AGT CGG CTC ATC TGT GCT	ATG TGG TAC TCT CTC CGT CTT GCT
KT008408	TMTlb	tmt9	TGT TGG TGT GTA TGT TCG GGACGA	AGG AGT TGA TGA AGC CGT ACC ACA
KT008409	TMT2a	tmtlO	TTA GTA AGA AGC GGA GCA GAA CCT	ATC CCA TAG GGA TGC AGT GTT GTT
KT008410	TMT2b	tmtl4	CGC AGA GGA GAG AGA ACC AC	TTA GTC CCG TTC TGC CAA AG
KT008411	TMT3a	tmt2	AGG TCG ATG CGA CCA ACT ACA AGA	AAA CAG AGG AGG CAG GGT CCA AAT
KT008412	TMT3b	tmt24	TGC GTG TGG TAC GGT TTC ATC AAT	ATC ATG GTG CAG TAA CGC TCG TAT
KT008413	encephalopsin (opn3)	panopsin	CCCTAT GCT GTG GTC TCC AT	TAG ATG ACG GGG TTG TAG GC
KT008414	neuropsin (opn5)	OPN5ml	ACA CCA TCT GTC GCT CCA TC	CTG CAA ATT GCC CAG TGT C
KT008415	0PN6a	novo3b	GTG GTC AAC ATC CCC TGG AG	ACA ACC AGC CGA GTA TGA GC
KT008416	0PN6b	novo3a	AAT CCA GCC AGG GAG GAG AT	AAG GCG GAC CAC ATG GAA AT
KT008417	0PN7a	novolx	GTT TAA ACA CTA CCCGCG CC	GCTCTG GCTCCA ATT CAG GT
KT008418	0PN7b	novola	TGC TAT ATC GTG CCC TG C TG	CGTACC GTC ACC AGG ATG AG
KT008419	0PN7c	novolb	GTG AAC CTG TCT GTG AGC GA	CTC CCC AAA CAA CCA CCT GT
KT008420	0PN7d	novoly	CTG CCA CTT GGA ATC ATC CT	GCG ACA CAT GCT GCT GTA CT
KT008421	0PN8a	novo2b	TGA CTG ACA TTG GCA TGG CT	TGG TTG AAA GCA GAG GCG AT
KT008422	0PN8b	novo2a	TTC GCT TCA TCG TGT CTT TG	CAG TGG GAA AAT AGC CCA GA
KT008423	0PN8c	novo2x	TGG GCT TTA TCC TTG CCT GG	AGA TGAAGC CTT CTG GTG CC
KT008424	0PN9	OPN5m2	TCA G GG CTT TG T TTT CGG G A	GCA GCG GTC AAG GGA TAT GA
KT008425	Peropsin (RRH)		AGT GGT TGC CAT TGA CCG AT	ATG CGG CCA CAA TCA GAA GA
KT008426	RGR1		CCT GGC TTT CTA CGC CGC AG	GGA CTT GTT CTC AAT AGC AGG ACT CTC
KT008427	RGR2		GAG CAC GTC TAT CAC CAT CAG CT	ACA CCC CAG CCA ATG GCA GG
KT008428	OPN4ml		CGT CAT CAC CTC TGA GTC CA	GCT GGA TTT GTC CCA ACA GT
KT008429	OPN4m2		AGC AAT GCT AGT GGG CAG AA	CGT CTG CTG CAT CCG TTT CA
KT008430	OPN4m3		AAG GCC AAT GGT TCG GAT CC	CCA GGT ATG AGC CTG GAA GA
KT008431	OPN4xl		GCT ACA CCT TGA TGC TCT GC	CTG TTG GAT GAG GGT GGT CT
KT008432	OPN4 × 2		CTT TGT GAA GCA GCA GTC CA	TAT GGA GCC CAG GAC AAA AC
NM_001077297.2	Cry 1a		AGG CTT ACA CAG CAG CAT CA	CTG CAC TGC CTC TGG ACT TT
NM 182857.2	Per2		TGG CTC TGG ACA GAA GTG AG	GGA TGT CTC GAG AAG GCA AC
NM 198143.1	L13		TCT GGA GGA CTG TAA GAG GTA TGC	AG A CGC ACA ATC TTG AG A GCA G
AB042254.1	6–4 photolyase	cry5	TGT GGA TCA TGA GGT TGT CC	TTG ATG GAT GGA CTC GCT TT
NM_001030183.1	Perla	perl	ATC CAG ACC CCA ATA CAA C	GGG AGA CTC TGC TCC TTC T
AF057040.1	Beta a ctin		CGC AAA TAC TCC GTC TGG AT	TCC CTG GAG AAG AGC TAC GA