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[Preprint]. 2021 Feb 19:2020.08.22.262931. Originally published 2020 Aug 24. [Version 2] doi: 10.1101/2020.08.22.262931

Table 4.

Eterna OpenVaccine rounds, included mRNA design challenges, default folding engine, and default metrics provided to participants.

Title Constructs Metrics provided Default folding engine URL
[Lightning Round] Eterna takes on the Coronavirus MEV, eGFP ΔG(MFE), ΔG(ensemble) ViennaRNA https://eternagame.org/labs/9818634
[Round 2] Design of eGFP and epitope mRNA molecules MEV, eGFP ΔG(MFE), ΔG(ensemble) ViennaRNA https://eternagame.org/labs/9833861
[Round 3-extended] Lightning Round Design + Vote of Nanoluciferase eGFP, Nluc ΔG(MFE), ΔG(ensemble) ViennaRNA https://eternagame.org/labs/9874218
[Round 4] The 5’ UTR Design Lab UTR design (not discussed here) ΔG(MFE), ΔG(ensemble), # hairpins, longest stem, GC content ViennaRNA https://eternagame.org/labs/10027854
[Computational lab] Eterna vs. Computers, p(unp) MEV, Nluc, eGFP, Spike RBD ΔG(MFE), ΔG(ensemble), AUP LinearFold/LinearPartition (ViennaRNA) https://eternagame.org/labs/10097602
[Special Design Challenge] Humans vs. Computers take on the full spike protein JEV+S ΔG(MFE), ΔG(ensemble), # unpaired nucleotides LinearFold/LinearPartition (ViennaRNA) https://eternagame.org/labs/10126540
Round 7 S-2P DegScore, DegScore Leaderboard, “branchiness”, Codon Usage, 3-way junctions, # hairpins, longest hairpin stem, GC content, energy of first 14 nts LinearFold/LinearPartition (EternaFold) https://eternagame.org/labs/10506533