Table 2. Various Bond Lengths (Å), Atom–Atom Distances (Å), and a Dihedral Angle (deg) of the Two Instances of FeVco in the PBD 5N6Y Crystal Structure and Values from Relaxed QM/MM (181 QM-Region Atoms) Structures.
model | crystal A | crystal B | [V-CO3]2– | [V-CO3]− | [V-CO3] | [V-NO3]− | [V-NO3] | [V-NO3]+ |
---|---|---|---|---|---|---|---|---|
spin (MS) | N/A | N/A | 3/2 | 1 | 3/2 | 3/2 | 1 | 3/2 |
BS | N/A | N/A | BS7-235 | BS7-235 | BS7-235 | BS7-235 | BS7-235 | BS7-235 |
Fe1–Fe2 | 2.71 | 2.68 | 2.69 | 2.71 | 2.71 | 2.69 | 2.71 | 2.70 |
Fe1–Fe3 | 2.66 | 2.65 | 2.63 | 2.65 | 2.65 | 2.62 | 2.65 | 2.65 |
Fe1–Fe4 | 2.58 | 2.57 | 2.58 | 2.57 | 2.60 | 2.56 | 2.55 | 2.56 |
V–Fe5 | 2.70 | 2.69 | 2.67 | 2.67 | 2.68 | 2.67 | 2.68 | 2.67 |
V–Fe6 | 2.77 | 2.75 | 2.81 | 2.78 | 2.82 | 2.81 | 2.79 | 2.81 |
V–Fe7 | 2.73 | 2.74 | 2.69 | 2.68 | 2.72 | 2.72 | 2.72 | 2.75 |
Fe2–Fe3 | 2.63 | 2.65 | 2.60 | 2.81 | 2.77 | 2.62 | 2.83 | 2.78 |
Fe2–Fe4 | 2.62 | 2.63 | 2.64 | 2.65 | 2.68 | 2.61 | 2.63 | 2.66 |
Fe3–Fe4 | 2.63 | 2.64 | 2.65 | 2.67 | 2.68 | 2.64 | 2.64 | 2.65 |
Fe5–Fe6 | 2.60 | 2.60 | 2.64 | 2.62 | 2.65 | 2.61 | 2.60 | 2.62 |
Fe5–Fe7 | 2.63 | 2.64 | 2.65 | 2.65 | 2.65 | 2.61 | 2.60 | 2.60 |
Fe6–Fe7 | 2.57 | 2.57 | 2.56 | 2.51 | 2.71 | 2.59 | 2.54 | 2.73 |
V–Fe1 | 7.11 | 7.09 | 7.05 | 7.00 | 7.00 | 7.04 | 7.01 | 6.99 |
C–Fe1 | 3.48 | 3.49 | 3.47 | 3.39 | 3.44 | 3.45 | 3.38 | 3.42 |
C–V | 3.63 | 3.60 | 3.59 | 3.61 | 3.57 | 3.59 | 3.63 | 3.57 |
Fe2–Fe6 | 2.61 | 2.63 | 2.62 | 2.60 | 2.60 | 2.63 | 2.60 | 2.60 |
Fe3–Fe7 | 2.60 | 2.60 | 2.58 | 2.58 | 2.57 | 2.59 | 2.58 | 2.57 |
Fe4–Fe5 | 2.76 | 2.78 | 2.70 | 2.67 | 2.63 | 2.64 | 2.63 | 2.59 |
Fe4–O1XO3 | 1.97 | 1.93 | 1.96 | 1.93 | 1.90 | 2.05 | 2.04 | 2.01 |
Fe5–O2XO3 | 1.93 | 1.94 | 1.97 | 1.94 | 1.91 | 2.05 | 2.02 | 2.00 |
∠Fe4–O1XO3-O2XO3-Fe5 | –11.30 | –10.93 | –13.85 | –14.42 | –15.09 | –11.15 | –10.76 | –10.74 |
V–Oalcohol | 2.17 | 2.17 | 2.16 | 2.14 | 2.12 | 2.15 | 2.12 | 2.07 |
V–Ocarboxy | 2.12 | 2.10 | 2.08 | 2.05 | 2.03 | 2.06 | 2.03 | 2.02 |
V–NHis423 | 2.30 | 2.31 | 2.21 | 2.21 | 2.20 | 2.21 | 2.21 | 2.21 |
Fe1–SCys257 | 2.29 | 2.32 | 2.29 | 2.27 | 2.25 | 2.28 | 2.26 | 2.25 |
Fe2–S2B | 2.21 | 2.23 | 2.21 | 2.17 | 2.17 | 2.19 | 2.16 | 2.16 |
Fe6–S2B | 2.17 | 2.21 | 2.19 | 2.17 | 2.15 | 2.17 | 2.17 | 2.14 |
Fe3–S5A | 2.23 | 2.23 | 2.20 | 2.17 | 2.16 | 2.19 | 2.16 | 2.15 |
Fe7–S5A | 2.27 | 2.25 | 2.21 | 2.19 | 2.17 | 2.20 | 2.18 | 2.15 |