TABLE 2.

Genes predicted in the PLAHV genome

Gene	Product	Positions	Orientationa	% amino acid sequence identity to:
				PtAHV1	HSV-1
RL1	ICP34.5	1405–2292	+	80.4	34.6
RL2	Ubiquitin E3 ligase; ICP0		+	Not calculated	17.6
	Exon 1	3297–3686		Not calculated	Not calculated
	Exon 2	4936–5529		Not calculated	Not calculated
UL1	Envelope glycoprotein L	7226–7933	+	74.6	36.6
UL2	Uracil-DNA glycosylase	8328–8990	+	89.1	46.4
UL3	Nuclear protein	9074–9742	+	82.9	53.8
UL4	Nuclear protein	9789–10421	−	89.7	44.4
UL5	Helicase-primase helicase subunit	10455–13076	−	95.1	78.4
UL6	Capsid portal protein	13075–15120	+	94.0	64.1
UL7	Tegument protein	15071–15958	+	92.9	61.1
UL8	Helicase-primase subunit	16077–18083	−	77.8	42.8
UL9	DNA replication origin-binding helicase	18436–20985	−	96.7	78.0
UL10	Envelope glycoprotein M	20942–22297	+	94.9	58.3
UL11	Myristylated tegument protein	22917–23174	−	88.2	44.8
UL12	DNase	23099–25069	−	80.4	50.4
UL13	Tegument serine/threonine protein kinase	25072–26619	−	96.7	66.2
UL14	Tegument protein	26379–26891	−	90.6	49.5
UL15	DNA packaging terminase subunit 1		+	97.3	82.7
	Exon 1	27110–28135		Not calculated	Not calculated
	Exon 2	31526–32701		Not calculated	Not calculated
UL16	Tegument protein	28183–29274	−	92.9	57.9
UL17	DNA packaging tegument protein	29306–31465	−	87.9	57.7
UL18	Capsid triplex subunit 2; VP23	32805–33761	−	96.2	78.3
UL19	Major capsid protein; VP5	33904–38049	−	95.9	82.8
UL20	Envelope protein	38218–38880	−	92.7	62.6
UL21	Tegument protein	39328–40893	+	91.2	59.9
UL22	Envelope glycoprotein H	40993–43563	−	89.9	48.8
UL23	Thymidine kinase	43733–44722	−	84.2	41.9
UL24	Nuclear protein	44802–45593	+	83.7	58.8
UL25	DNA packaging tegument protein	45792–47540	+	95.0	76.3
UL26	Capsid maturation protease	47619–49502	+	84.7	55.5
UL27	Envelope glycoprotein B	49833–52052	−	94.7	59.0
UL28	DNA packaging terminase subunit 2	52477–54837	−	91.3	71.4
UL29	Single-stranded DNA-binding protein; ICP8	54976–58566	−	95.9	81.1
UL30	DNA polymerase catalytic subunit	59282–62989	+	92.2	73.5
UL31	Nuclear egress lamina protein	62916–63848	−	95.8	74.0
UL32	DNA packaging protein	63841–65592	−	92.1	70.2
UL33	DNA packaging protein	65591–65980	+	94.6	65.6
UL34	Nuclear egress membrane protein	66042–66872	+	87.7	57.6
UL35	Small capsid protein	66957–67286	+	92.7	56.6
UL36	Large tegument protein	67381–75249	−	76.1	46.9
UL37	Tegument protein	76461–79718	−	93.5	62.0
UL38	Capsid triplex subunit 1	80085–81473	+	83.3	59.6
UL39	Ribonucleotide reductase subunit 1	81831–85625	+	82.5	52.9
UL40	Ribonucleotide reductase subunit 2	85661–86668	+	94.9	73.8
UL41	Tegument host shutoff protein	86793–88286	−	94.6	64.5
UL42	DNA polymerase processivity subunit	88701–90164	+	74.7	46.1
UL43	Envelope protein	90326–91510	+	78.9	36.3
UL44	Envelope glycoprotein C	91687–93075	+	81.4	44.0
UL45	Membrane protein	93186–93698	+	86.5	44.8
UL46	Tegument protein VP11/12	93778–96186	−	86.9	49.9
UL47	Tegument protein VP13/14	96249–98378	−	87.7	55.8
UL48	Transactivating tegument protein VP16	98738–100186	−	91.9	65.5
UL49	Tegument protein VP22	100578–101447	−	77.2	39.4
UL49A	Envelope glycoprotein N	101767–102012	−	81.5	30.8
UL50	Deoxyuridine triphosphatase	102025–103089	+	89.8	41.3
UL51	Tegument protein	103210–103899	−	90.4	59.6
UL52	Helicase-primase primase subunit	103975–107115	+	87.0	63.1
UL53	Envelope glycoprotein K	107085–108092	+	93.7	64.8
UL54	Multifunctional expression regulator; ICP27	108732–110366	+	77.7	54.1
UL55	Nuclear protein	110705–111256	+	97.3	61.8
UL56	Membrane protein	111957–112835	−	67.5	26.8
RL2	Ubiquitin E3 ligase; ICP0		−	Not calculated	17.6
	Exon 1	116672–117061		Not calculated	Not calculated
	Exon 2	114829–115422		Not calculated	Not calculated
RL1	ICP34.5	118066–118953	−	80.4	34.6
RS1	ICP4	121128–124547	−	85.4	56.4
US1	Regulatory protein ICP22	126048–127286	+	68.3	37.0
US2	Virion protein	127413–128315	−	89.3	59.2
US3	Serine/threonine protein kinase	128549–129946	+	90.3	58.6
US4	Envelope glycoprotein G	130039–132231	+	54.2	11.1
US5	Envelope glycoprotein J	132460–133098	+	Not calculated	14.7
US6	Envelope glycoprotein D	133385–134557	+	88.0	57.6
US7	Envelope glycoprotein I	134720–136102	+	60.8	35.6
US8	Envelope glycoprotein E	136322–137989	+	71.7	39.9
US8A	PtAHV1 US8A-like protein	137931–138221	+	55.6	22.8
RS1	ICP4	139854–143273	+	85.4	56.4

^a+ and −, forward and reverse directions, respectively.