Table 1. List of datasets used for Scavenger testing and evaluation.
The datasets are divided into three sections: 1. Datasets from selected non-reference mouse strain, 2. Normal (bulk) RNA-seq dataset from either human or mouse, and 3. Single-cell RNA-seq dataset from mouse.
| Accession ID | Samples ID | Organism | Tissue/Source |
|---|---|---|---|
| SRP039411 | SRR1182782 - SRR1182783 | Mus musculus | Liver |
| ERP000614 | ERR032989 - ERR032991; ERR032997 - ERR032998;
ERR033006 - ERR033009; ERR033017 - ERR033019 |
Mus musculus | Brain |
| SRP020636 | SRR826292 - SRR826299; SRR826308 - SRR826315;
SRR826340 - SRR826347; SRR826356 - SRR826363 |
Mus musculus | Liver |
| SRP068123 | SRR3087147 - SRR3087158; SRR3087171 - SRR3087176 | Mus Musculus | Hippocampus |
| SRP013610 | SRR504764 - SRR504766 | Mus musculus | Eye |
| SRP076218 | SRR3641982 - SRR3641983; SRR3641990; SRR3642003
- SRR3642005; SRR3642012 - SRR3642014 |
Mus musculus | Heart |
| SRP045630 | SRR1554415 - SRR1554417 | Mus musculus | Retina |
| SRP016501 | SRR594393 - SRR594401 | Mus musculus | Brain; Colon; Heart; Kidney; Liver; Lung;
Skeletal Muscle; Spleen; Testes |
| SRP075605 | SRR3578721 - SRR3578725 | Homo sapiens | Fibroblasts |
| SRP122535 | SRR6337339 - SRR6337344 | Homo sapiens | Embryonic stem cell |
| SRP013027 | SRR4422503 - SRR4422506; SRR4422535 - SRR4422538;
SRR4422626 - SRR4422629 |
Mus musculus | Hindbrain; Limb; Heart |
| SRP045452 | 80 randomly selected samples | Mus musculus | Hippocampus |