. 2022 Oct 13;8:1587. Originally published 2019 Sep 4. [Version 2] doi: 10.12688/f1000research.19426.2

Table 3. Alignment statistics for simulated datasets before and after Scavenger recovery using optimised parameters for STAR.

Dataset	Source execution			Scavenger pipeline			Unaligned reads recovered	% recovered reads correct	% recovered reads incorrect
Dataset	Aligned correctly	Aligned incorrectly	Unaligned	Aligned correctly	Aligned incorrectly	Unaligned	Unaligned reads recovered	% recovered reads correct	% recovered reads incorrect
T1	9,673,309	6,861	15,660	9,673,362	6,948	15,519	141	37.8	62.2
T2	9,643,573	14,570	11,237	9,643,715	14,675	10,990	246	55.5	44.5
T3	9,437,748	75,395	83,687	9,445,855	75,448	75,527	8,160	99.4	0.6

The result shown is an average from 3 samples.