. 2022 Oct 13;8:1587. Originally published 2019 Sep 4. [Version 2] doi: 10.12688/f1000research.19426.2

Table 7. Alignment statistics for simulated datasets before and after Scavenger recovery using default parameters for Subread.

Dataset	Source execution			Scavenger pipeline			Unaligned reads recovered	% recovered reads correct	% recovered reads incorrect
Dataset	Aligned correctly	Aligned incorrectly	Unaligned	Aligned correctly	Aligned incorrectly	Unaligned	Unaligned reads recovered	% recovered reads correct	% recovered reads incorrect
T1	9,305,067	74,497	620,436	9,332,335	79,653	588,012	32,424	84.1%	15.9%
T2	8,985,799	87,576	926,625	9,107,130	92,296	800,574	126,051	96.3%	3.7%
T3	4,802,130	106,487	5,091,384	4,984,817	108,947	4,906,235	185,148	98.7%	1.3%

The result shown is an average from 3 samples.