. 2022 Oct 13;8:1587. Originally published 2019 Sep 4. [Version 2] doi: 10.12688/f1000research.19426.2

Table 8. Alignment statistics for simulated datasets before and after Scavenger recovery using optimised parameters for Subread.

Dataset	Source execution			Scavenger pipeline			Unaligned reads recovered	% recovered reads correct	% recovered reads incorrect
Dataset	Aligned correctly	Aligned incorrectly	Unaligned	Aligned correctly	Aligned incorrectly	Unaligned	Unaligned reads recovered	% recovered reads correct	% recovered reads incorrect
T1	9,416,480	262,926	320,594	9,419,057	264,906	316,037	4,557	56.5%	43.5%
T2	9,283,792	397,323	318,885	9,287,022	398,775	314,203	4,682	69.0%	31.0%
T3	7,111,603	2,251,068	637,330	7,122,864	2,251,625	625,512	11,818	95.3%	4.7%

The result shown is an average from 3 samples.