Table 2.
Details of ROH_island defined by SNP occurrences (>70%). Start and End ROH positions as well as the ROH length are expressed in bp and are in concordance with the Turkey_5.0 (GCA_000146605.1) genome assembly.
| Chr | Start ROH Position | End ROH Position | ROH Length | Gene 1 |
|---|---|---|---|---|
| ROH_island in HYB | ||||
| 2 | 23,019,543 | 23,992,770 | 973,227 | MTA3, HAAO |
| 4 | 48,508,445 | 49,752,492 | 124,4047 | RBM47, CHRNA9, RHOH, N4BP2, PDS5A, UBE2K, SMIM14, UGDH, LIAS, RPL9, KLB, RFC1, WDR19, KLHL5, TMEM156, FAM114A1, KLF3, TBC1D1, PGM2, RELL1, C4H4orf19, NWD2 |
| 8 | 35,534 | 3,564,550 | 3,529,016 | GHITM, NRG3, SH2D4B, TSPAN14, FAM213A, EXOSC3, DYDC1, MAT1A, RASGEF1A, CSGALNACT2, RET, BMS1, PLAC9, ANXA11, ECD, FAM149B1, DNAJC9, TFAM, UBE2D1, CISD1, IPMK, PCDH15 |
| 8 | 4,968,066 | 5,916,410 | 948,344 | CHAT, OGDHL, PARG, NCOA4, GPRIN2, SYT15, FAM35A, GLUD1, ADIRF, SNCG, MMRN2, BMPR1A, LDB3, OPN4, WAPL |
| 8 | 8,483,294 | 9,342,515 | 859,221 | RTKN2, ARID5B, TMEM26, RHOBTB1, CDK1 |
| 11 | 3,058,621 | 3,097,354 | 38,733 | - |
| 22 | 1,595,252 | 1,986,192 | 390,940 | ASIP, EIF2S2, RALY |
| ROH_island in MEX_cl_1 | ||||
| 13 | 11,244,459 | 11,371,128 | 126,669 | HYDIN, MTSS1L, SF3B3 |
| ROH_island in MEX_cl_2 | ||||
| 7 | 9,145,051 | 10,872,877 | 1,727,826 | DNAH7, BIRC5, STK17B, HECW2, GTF3C3, C7H2orf66, PGAP1, ANKRD44, SF3B1, COQ10B, HSPD1, RFTN2, BOLL, PLCL1, SATB2, C7H2orf69, TYW5, MAIP1, SPATS2L, KCTD18, SGO2, AOX1, BZW1, CLK1, PPIL3, NIF3L1, ORC2, FAM126B |
| 8 | 1,401,303 | 3,748,153 | 2,346,850 | EXOSC3, DYDC1, MAT1A, RASGEF1A, CSGALNACT2, RET, BMS1, PLAC9, ANXA11, ECD, FAM149B1, DNAJC9, TFAM, UBE2D1, CISD1, IPMK, PCDH15, PRKG1 |
1 Italic: overlapped genes.