Table 6.
ResFinder and PlasmidFinder output of the Salmonella Kentucky isolates S16BD08730, S18BD00684, S18BD03994 and S18BD05011.
| ResFinder | S16BD08730 | S18BD03394 | S18BD05011 | S18BD00684 | ||||||||
| Resistance Gene | Contig | Identity | Query/Template Length | Contig | Identity | Query/Template Length | Contig | Identity | Query/Template Length | Contig | Identity | Query/Template Length |
| aac(3)-IIa 1 | - | - | - | - | - | - | 3 | 100 | 861/861 | - | - | - |
| aac(3)-Id 1 | 1 | 100 | 477/477 | 1 | 100 | 477/477 | 1 | 100 | 477/477 | - | - | - |
| aac(6 ′)-Iaa 1 | 1 | 98.63 | 438/438 | 1 | 98.63 | 438/438 | 1 | 98.63 | 438/438 | 1 | 98.63 | 438/438 |
| aadA1 1 | - | - | - | - | - | - | 2 | 100 | 789/789 | - | - | - |
| aadA7 1 | 1 | 100 | 798/798 | 1 | 100 | 798/798 | 1 | 100 | 798/798 | - | - | - |
| aph(3 ′′)-Ib 1 | 1 | 100 | 804/804 | 1 | 100 | 804/804 | 1 | 100 | 804/804 | - | - | - |
| aph(3 ′)-Ia 1 | 1 | 100 | 816/816 | 1 | 100 | 816/816 | 1 | 100 | 816/816 | - | - | - |
| aph(6)-Id 1 | 1 | 100 | 837/837 | 1 | 100 | 837/837 | 1 | 100 | 837/837 | - | - | - |
| bla CMY-2 2 | - | - | - | - | - | - | - | - | - | 2 | 100 | 1146/1146 |
| bla CTX-M-14b 2 | 1 | 100 | 876/876 | 1 | 100 | 876/876 | 2 | 99.89 | 876/876 | - | - | - |
| bla TEM-1B 2 | - | - | - | - | - | - | 3 | 100 | 861/861 | 1 | 100 | 861/861 |
| floR 3 | - | - | - | - | - | - | 3 | 98.19 | 1214/1215 | - | - | - |
| sul1 4 | 1 | 100 | 840/840 | 1 | 100 | 840/840 | 1 | 100 | 840/840 | - | - | - |
| tet(A) 5 | 1 | 100 | 1200/1200 | 1 | 100 | 1200/1200 | 1 | 100 | 1200/1200 | 1 | 100 | 1200/1200 |
| PlasmidFinder | S16BD08730 | S18BD03394 | S18BD05011 | S18BD00684 | ||||||||
| Replicon | Contig | Identity | Query/Template Length | Contig | Identity | Query/Template Length | Contig | Identity | Query/Template Length | Contig | Identity | Query/Template Length |
| IncI2(Delta) | 4 | 98.1 | 316/316 | - | - | - | - | - | - | - | - | - |
| IncX4 | 5 | 99.73 | 374/374 | - | - | - | - | - | - | - | - | - |
| Col440I | - | - | - | - | - | - | 5 | 96.36 | 110/114 | - | - | - |
| IncHI2 | - | - | - | - | - | - | 2 | 100 | 327/327 | - | - | - |
| IncHI2A | - | - | - | - | - | - | 2 | 99.52 | 630/630 | - | - | - |
| IncX3 | - | - | - | - | - | - | 3 | 100 | 374/374 | - | - | - |
| IncI1-I(Gamma) | - | - | - | - | - | - | - | - | - | 2 | 100 | 142/142 |
In bold and underlined is indicated whether the AMR gene is located on a plasmid. Four chromosomal point mutations in the parC and gyrA genes conferring nalidixic acid and ciprofloxacin resistance were detected in each isolate. 1 Aminoglycoside; 2 beta-lactam; 3 phenicol; 4 sulfonamide; 5 tetracycline.