ANI | Average Nucleotide Identity |
CFU | Colony-Forming Unit |
cgMLST | core genome Multilocus Sequence Typing |
EAEC | Enteroaggregative E. coli |
EHEC | Enterohaemorrhagic E. coli |
EPEC | Enteropathogenic E. coli |
ETEC | Enterotoxigenic E. coli |
MAEC | Mastitis-associated E. coli |
Mm0h | Minced Meat sample enriched for 0 h |
Mm24h | Minced Meat sample enriched for 24 h |
SNP | Single Nucleotide Polymorphism |
spMm24h | spiked Minced Meat sample enriched for 24 h |
WGS | Whole Genome Sequencing |