CP	Chloroplast
NGS	Next-generation sequencing
LSC	Large single copy
SSC	Small single copy
IR	Inverted repeat
GC	Guanine-cytosine
PCGs	Protein-coding genes
cpSSRs	Chloroplast simple sequence repeats
ISSR	inter-simple sequence repeat
RSCU	Relative synonymous codon usage
CNS	Conserved non-coding sequences
RAPD	Random amplification of polymorphic DNA
SCoT	Start codon targeted polymorphism
ML	Maximum likelihood
BIC	Bayesian information criterion