TABLE 1.
Mutation | Disease | Source | Pathogenicity1 | Pathogenicity prediction by PolyPhen-2 |
p.D29G | Hypomyelinating leukodystrophy | (Magen et al., 2008; Parnas et al., 2009; Bross and Fernandez-Guerra, 2016); ClinVar | Proven | Benign |
p.A34V | N. R.2 | gnomAD | Unlikely | Benign |
p.D35G | N. R. | gnomAD | Unlikely | Benign |
p.M55L | N. R. | gnomAD | Unlikely | Benign |
p.V98I | Spastic paraplegia 13 (SPG13) | (Fontaine et al., 2000; Hansen et al., 2002; Bross et al., 2008; Bross and Fernandez-Guerra, 2016); ClinVar | Proven | Possibly damaging |
p.E129K | Spastic paraplegia | ClinVar; gnomAD; NHLBI ESP | Likely | Possibly damaging |
p.K133E | N. R. | ClinVar | Likely | Benign |
p.R221Q | Hereditary spastic paraplegia 13 | ClinVar; gnomAD; NHBLI ESP | Likely | Benign |
p.Y223C | N. R. | gnomAD | Likely | Probably damaging |
p.N265S | Hereditary spastic paraplegia 13 | (Bross and Fernandez-Guerra, 2016); ClinVar; gnomAD; NHLBI ESP | Likely | Possibly damaging |
p.V287I | Hereditary spastic paraplegia 13 | ClinVar | Likely | Benign |
p.E328V | N. R. | gnomAD | Unlikely | Possibly damaging |
p.Q461E | Autosomal dominant spastic paraplegia (SPG13) | (Hansen et al., 2007; Bross and Fernandez-Guerra, 2016) | Proven | Probably damaging |
p.K473Q | N. R. | gnomAD | Likely | Benign |
p.S488T | N. R. | gnomAD | Likely | Possibly damaging |
p.D504N | N. R. | gnomAD | Unlikely | Benign |
p. A505T | N. R. | gnomAD | Unlikely | Benign |
p.M506V | N. R. | gnomAD | Unlikely | Benign |
1Assessed by the study of the possible consequence of mutations on hHsp60 structure related to the function and chemical-physical properties of the substituted amino acids (see text). 2N.R., none reported.