Table 3C.
Predicted Deleteriousness by Several in Silico Tools for the Variants Found in Ubiquitin Genes
Case ID | Gene | Trancript | Variant/AA change | SIFT | PolyPhen | PredictSNP2 | Mutation Taster | Mutation Assessor (FI score) |
---|---|---|---|---|---|---|---|---|
R120 | TRIM2 | NM_015271.3 | c.158G>C/p.Cys53Ser | D | Probably damaging | 87% D | D/AA/Protein/SS | High (4.6) |
R240 | HECTD1 | NM_015382.3 | c.5000G>A/p.Arg1667His | D | Probably damaging | 87% D | D/AA/Protein/SS | Low (1.83) |
R110, R111 | SQSTM1 | NM_003900.4 | c.1210A>G/p.Met404Val | D | Possibly damaging | 87% D | D/AA/Protein/SS | Medium (2.98) |
AA, amino acid; FI, functional impact.