Table 2.
Assembly errors identified in BioNano scaffolds by BAC clone FISH to C. picta chromosomes.
| ID BioNano Scaffold | ID NCBI Scaffold | Scaffold Size (bp) | BAC ID | Chromosome |
|---|---|---|---|---|
| 60 | ML621305.1 | 21,088,589 | 537D7 | 1q |
| 106H12 | 4 | |||
| 153 | ML621386.1 | 8,440,838 | 168O10 | 1q |
| 116H12 | 22 | |||
| 163 | ML621393.1 | 21,409,697 | 318A22 | 5q |
| 38H12 | 8 | |||
| 178 | ML621404.1 | 40,323,178 | 225A1 | 6 |
| 63H12 | 4 | |||
| 15 | ML621261.1 | 59,628,869 | 15H12 | 5 |
| 72H12, 35H18 | 6 | |||
| 70 | ML621314.1 | 11,495,585 | 147L13 | 1 |
| 27H12 | 11 | |||
| 207 | ML621424.1 | 27,887,944 | 45H12, 55A6 | 1 |
| 26H12 | 13 |
Errors were identified when two or more BAC clones painted to two different chromosomes but aligned to a single scaffold in the painted turtle genome assembly. Gray cells with bold font denote BAC-FISH data collected de novo in this study, whereas BACs in clear cells denote previously published BAC-FISH data [12].