Table 3.
Genes in the sex determination network of turtles and vertebrates that mapped to BioNano hybrid scaffolds, along with their chromosomal location and gene order in C. picta (CPI) and chicken (GGA) chromosomes.
| ID BioNano Scaffold | ID NCBI Scaffold | Sex-Related Genes | CPI Chromosome | GGA Chromosome | Gene Order |
|---|---|---|---|---|---|
| 289 | ML621472.1 | Fhl2 | 1 | 1 |
CPI-1:
Fhl2-Dax1-Fgf9
GGA-1: Dax1-Fhl2-Fgf9 |
| 70 | ML621314.1 | Dax1 (Nr0b1) | 1 | 1 | |
| 207 | ML621424.1 | Fgf9 | 1 | 1 | |
| 339 | ML621502.1 | Ctnnb1 | 2 | 2 | |
| 65 | ML621310.1 | Sox9 | 3 | 18 |
CPI-3:
Sox9-Esr1-Gata4
GGA-3: Esr1-Gata4 GGA-18: Sox9 |
| 65 | ML621310.1 | Esr1 | 3 | 3 | |
| 135 | ML621369.1 | Gata4 | 3 | 3 | |
| 330 | ML621494.1 | Wt1 | 4 | 5 | |
| 59 | ML621304.1 | Gata2 | 5 | 12 |
CPI-5:
Gata2-Emx2
GGA-6: Emx2 GGA-12: Gata2 |
| 15 | ML621261.1 | Emx2 | 5 | 6 | |
| 75 | ML621319.1 | Aco1 | 7 | Z |
CPI-7:
Aco1-Dmrt1-Dmrt2-Rps6
GGA-Z: Dmrt1-Dmrt2-Rps6-Aco1 |
| 128 | ML621363.1 | Dmrt1 Dmrt2 Rps6 | 7 | Z | |
| 163 | ML621393.1 | Lhx9 | 8 | 8 |
CPI-8:
Lhx9-Dmrtb1
GGA-8: Lhx9-Dmrtb1 |
| 309 | ML621483.1 | Dmrtb1 | 8 | 8 | |
| 4 | ML621250.1 | Foxl2 | 9 | 9 | |
| 145 | ML621378.1 | Gpn3 | 17 | 15 | |
| 198 | ML621416.1 | Rspo1 | 18 | 23 | |
| 83 | ML621327.1 | Sf1 (Nr5a1) | 20 | 17 |