Table 4.

Chromosome comparison between the published chromosome-level genome assembly of T. s. elegans (TSE) [13] and de novo BAC-FISH data from T. scripta (TSC) (present study).

BAC ID	TSE Assembly Scaffold	Assembly TSE Chromosome Assignment	BAC-FISH-Based TSC Chromosome (True Location)
68H12	CM023056.1	TSE 1	TSC 1
7H12	CM023056.1	TSE 1	TSC 1
67H12	CM023058.1	TSE 3	TSC 1
O34H12	CM023056.1	TSE 1	TSC 1
61H12	CM023056.1	TSE 1	TSC 1
45H12	CM023056.1	TSE 1	TSC 1
113H12	CM023056.1	TSE 1	TSC 1
14H12	CM023057.1	TSE 2	TSC 2
99H12	CM023057.1	TSE 2	TSC 2
5H12	CM023057.1	TSE 2	TSC 2
25H12	CM023057.1	TSE 2	TSC 2
96H12	CM023057.1	TSE 2	TSC 2
4H12	CM023057.1	TSE 2	TSC 2
125H12	CM023058.1	TSE 3	TSC 3
53H12	CM023058.1	TSE 3	TSC 3
82H12	CM023058.1	TSE 3	TSC 3
104H12	CM023058.1	TSE 3	TSC 3
31H12	CM023058.1	TSE 3	TSC 3
94H12	CM023059.1	TSE 4	TSC 4
85H12	CM023059.1	TSE 4	TSC 4
88H12	CM023059.1	TSE 4	TSC 4
6H12	CM023059.1	TSE 4	TSC 4
63H12	CM023059.1	TSE 4	TSC 4
106H12	CM023059.1	TSE 4	TSC 4
120H12	CM023060.1	TSE 5	TSC 5
33H12	CM023060.1	TSE 5	TSC 5
72H12	CM023060.1	TSE 5	TSC 5
9H12	CM023058.1	TSE 3	TSC 6
122H12	CM023061.1	TSE 6	TSC 6
114H12	CM023062.1	TSE 7	TSC 7
60H12	CM023062.1	TSE 7	TSC 7
15H12	CM023062.1	TSE 7	TSC 7
3H12	CM023063.1	TSE 8	TSC 8
54H12	CM023063.1	TSE 8	TSC 8
40H12	CM023063.1	TSE 8	TSC 8
38H12	CM023063.1	TSE 8	TSC 8
105H12	CM023063.1	TSE 8	TSC 8
123H12	CM023063.1	TSE 8	TSC 8
78H12	CM023064.1	TSE 9	TSC 9
89H12	CM023064.1	TSE 9	TSC 9
29H12	CM023065.1	TSE 10	TSC 10
27H12	CM023066.1	TSE 11	TSC 11
100H12	CM023069.1	TSE 14	TSC 13
26H12	CM023069.1	TSE 14	TSC 13
118H12	CM023068.1	TSE 13	TSC 15
121H12	CM023075.1	TSE 20	TSC 18
12H12	CM023058.1	TSE 3	TSC 19
28H12	CM023074.1	TSE 19	TSC 24
52H12	CM023071.1	TSE 16	TSC 21
116H12	CM023077.1	TSE 22	TSC 22
16H12	CM023071.1	TSE 16	TSC 25

Grey cells denote discrepancies detected.