Table 2.
Comparison of CD32 and CD18 read counts in milk and blood derived from RNA-Seq experiments in Holstein.
| Milk | Blood | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Number of Reads | RPKM | Number of Reads | RPKM | |||||||||||||||
| # 1 | SRA | Total | 1 | 4 | 7 | 9 | Sum 2 | CD32 | CD18 | R 3 | SRA | Total | 1 | 4 | 7 | 9 | CD32 | CD18 |
| 1 | 394 | 27,331,010 | 1 | 17 | 6 | 176 | 200 | 27.4 | 201.2 | 270 | 8,584,110 | 0 | 5 | 5 | 104 | 36.4 | 378.6 | |
| 2 | 376 | 19,981,694 | 5 | 7 | 7 | 205 | 225 | 31.3 | 320.6 | 226 | 21,522,312 | 0 | 2 | 2 | 173 | 5.8 | 251.2 | |
| 3 | 254 | 18,609,806 | 0 | 13 | 0 | 219 | 232 | 21.8 | 367.7 | 250 | 1,177,238 | 0 | 0 | 0 | 16 | 0.0 | 424.7 | |
| 4 | 367 | 16,301,126 | 3 | 2 | 10 | 220 | 235 | 28.8 | 421.8 | 218 | 22,950,370 | 0 | 13 | 17 | 192 | 40.8 | 261.4 | |
| 5 | 368 | 20,876,820 | 0 | 19 | 7 | 209 | 235 | 38.9 | 312.8 | 170 | 14,416,000 | 0 | 17 | 16 | 164 | 71.5 | 355.5 | |
| 6 | 340 | 21,342,290 | 10 | 54 | 0 | 173 | 237 | 93.7 | 253.3 | 235 | 13,338,032 | 0 | 26 | 0 | 144 | 60.9 | 337.4 | |
| 7 | 341 | 25,687,198 | 4 | 42 | 0 | 203 | 249 | 56.0 | 247.0 | 236 | 16,838,534 | 1 | 26 | 0 | 406 | 50.1 | 753.5 | |
| 8 | 210 | 14,517,104 | 2 | 6 | 9 | 235 | 252 | 36.6 | 505.9 | 257 | 9,046,998 | 0 | 0 | 7 | 103 | 27.6 | 355.8 | |
| 9 | 361 | 23,695,512 | 0 | 22 | 9 | 247 | 279 | 42.2 | 325.7 | 207 | 13,028,116 | 0 | 15 | 8 | 274 | 55.2 | 657.2 | |
| 10 | 232 | 17,678,968 | 0 | 0 | 3 | 306 | 309 | 5.3 | 540.9 | −0.55 | 168 | 23,333,558 | 0 | 2 | 34 | 122 | 48.2 | 163.4 |
| 11 | 188 | 40,398,796 | 3 | 42 | 8 | 277 | 330 | 41.0 | 214.3 | −0.65 | 214 | 23,555,514 | 1 | 26 | 20 | 223 | 63.7 | 295.8 |
| 12 | 345 | 26,493,242 | 2 | 40 | 0 | 299 | 341 | 49.5 | 352.7 | −0.67 | 193 | 23,755,222 | 0 | 51 | 0 | 307 | 67.1 | 403.9 |
| 13 | 318 | 41,897,140 | 0 | 177 | 103 | 68 | 348 | 208.8 | 50.7 | −0.81 | 229 | 6,410,488 | 0 | 9 | 2 | 59 | 53.6 | 287.6 |
| 14 | 321 | 45,013,510 | 15 | 32 | 32 | 362 | 441 | 54.8 | 251.3 | −0.79 | 230 | 21,228,336 | 1 | 19 | 19 | 303 | 504.9 | 446.0 |
| 15 | 365 | 18,179,706 | 0 | 7 | 3 | 439 | 449 | 17.2 | 754.6 | −0.73 | 258 | 11,983,986 | 0 | 9 | 4 | 157 | 33.9 | 409.4 |
| 16 | 316 | 30,449,572 | 0 | 24 | 15 | 410 | 449 | 40.0 | 420.8 | −0.72 | 261 | 3,872,402 | 0 | 7 | 1 | 61 | 64.6 | 492.3 |
| 17 | 243 | 28,918,832 | 8 | 22 | 12 | 443 | 485 | 45.4 | 478.7 | −0.74 | 217 | 18,766,692 | 3 | 19 | 11 | 214 | 55.0 | 356.3 |
| 18 | 349 | 30,480,908 | 10 | 88 | 0 | 541 | 639 | 100.5 | 554.7 | −0.61 | 273 | 8,150,358 | 0 | 12 | 0 | 119 | 46.0 | 456.3 |
1 Each line presents an individual cow, omitting the SRX2235 prefix from its matching SRA IDs. 2 Table is sorted by the sum of counts of reads for CD32 transcript-matching probes 1–8 and, probe 9 matching CD18. 3 Correlation was calculated between the preceding CD32 and CD18 RPKM records over a sliding window of 10 lines.