Table 2.
Study | Patient Population | n | ctDNA Assay | Study Design | Mutations Tested in the Plasma | Major Findings |
---|---|---|---|---|---|---|
Andersen et al. [37] | CCA | 5 | Multiplex digital PCR | Plasma samples from CCA patients with known tumor mutations were tested to determine blood/tissue concordance | Total 31 mutations in the KRAS, NRAS, BRAF, and PIK3CA genes. | All known mutations in the tumor were detected in plasma samples in all patients. |
Ettrich et al. [36] | CCA (54% iCCA, 46% eCCA) | 24 | NGS-based assay | Tumor tissue and corresponding plasma samples were collected to investigate blood/tissue concordance | 15 genes frequently mutated in CCA * | The blood/tissue concordance was 74% overall and 92% for intrahepatic CCA. The VAF in ctDNA correlated with the tumor burden, and in iCCA, with the PFS. |
Goyal et al. [38] | Phase I study of BGJ398 in iCCA patients | 3 | Droplet digital PCR | ctDNA analyses on serial plasma samples before and after treatment to determine the resistance mechanism | FGFR2 mutations | In all 3 cases, post-progression sequencing of the FGFR2 gene demonstrated de novo point mutations that conferred resistance to BGJ298 |
Mody et al. [39] | Advanced BTC (70% iCCA) | 124 | NGS-based assay developed by Guardant Health | Plasma samples obtained to find therapeutically relevant alterations as part of routine clinical care | 73-gene panel | Therapeutically relevant alterations were observed in 55% of patients (21% of patients had one of the following alterations—BRAF mutations, ERBB2 amplification, FGFR2 fusions, FGFR2 mutations, and IDH1 mutations). |
Abbreviations: CCA, cholangiocarcinoma; PCR, polymerase chain reaction; iCCA, intrahepatic cholangiocarcinoma; eCCA, extrahepatic cholangiocarcinoma; VAF, variant allele fraction; PFS, progression-free survival; NGS, next-generation sequencing.* TP53, KRAS, ARID1A, BAP1, PBRM1, PIK3CA, SMAD4, FBXW7, IDH1, BCL2, BRAF, CDKN2A, ERBB2, IDH2, and NRAS.