Table 1.
Overview of the benchmark datasets
| Dataset | # features | # cells | Protocol | Description |
|---|---|---|---|---|
| Koh | 33922 | 531 | SMARTer | 9 FACS purified differentiation stages |
| Kumar | 41930 | 246 | SMARTer | Mouse ESC cultured in 3 different conditions |
| Zhengmix4eq | 10434 | 3994 | 10x | Mixtures of FACS purified PBMCs |
| Zhengmix4uneq | 11369 | 6498 | 10x | Mixtures of FACS purified PBMCs |
| Zhengmix8eq | 10600 | 3994 | 10x | Mixtures of FACS purified PBMCs |
| mixology10x3cl | 16208 | 902 | 10x | Mixture of 3 cancer cell lines from CellBench |
| mixology10x5cl | 11786 | 3918 | 10x | Mixture of 5 cancer cell lines from CellBench |
| simMix1 | 3696 | 2500 | 10x-based | Simulation of 10 human cell subpopulations |
| simMix2 | 8893 | 3000 | 10x-based | Simulation of 9 mouse cell subpopulations |
# features indicates the number of features detected in at least 10 cells